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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00062242-protein ID=TCONS_00062242-protein|Name=TCONS_00062242-protein|organism=Clytia hemisphaerica|type=polypeptide|length=3092bp
MKKLFVATIIALVLANKAQTASYFYEDFTSYINFEKNATDPFTFKMSFDE
SEHTYGPFDDHVVFIVEALAFGWTPVSVTFADSVSGEEIHNWLAFLDSDV
FDLQVFPVSTDPTTAVGKAQVNLVFNKSDVVTAQTYVNDILPNCTIRYDG
VTYFIPISVNQLSLGYNDHVGVPVQFSQTFSSPFDPTLDYQVFCGHLNVS
GYFYHPMSPAYSIYDTDDYITFKEVVIFTGTDSFWIGIDYDILTMFKKGV
MVNLGGTTNQTVVETDAQLNFDCSYGTNKISLTAHNILTNEFDIILKDNL
AQRIYVVNSTLVKKVNEPVKWNNETNNYELAWSYESGVMMTVTVSGHEIG
QPVVIAFIEEVADEIFFFVEVPDSSFEDVFVSSKNGEQDAPLFEELPVPF
DLEELIPPSELTYYNCSTRRCPIEFTIYGIDENKTVCNISHNFLPQFNFS
CHSIPDNRSASVECFNETMVFTYKAYWRDHPIVNITCYHDIEKMNVWYQD
GVELEVEPVELKFDHGEIQPDMTMNLHFEYIRLVKNVSQVRVLEVDFDRK
KTVVHDITNITMFDFNSTVGHIPFTFVHGKSYRIWFELRNGVYIDVFAKT
FTVPEISVTTLKKYHAVAHDFLIDGYYPYNISASMGDGFYRFNYTKWIWT
YMGHVNETEDEILHIPSMPLVKDCYLLQVSVEGLNNLEMRSNQTMCTEIG
INATMEFDFAVSLGVTSFFRSLVTREGTDSCLAIDVDGTLFANNMTACTM
HGITQALGSATQLTFNQSQTQNGDAIDLAIAEHLFSAAGEYTIKMIAKNN
VHDQVEEYEQSIISLDCRVPELTILGAGLQEDIQVTITRGQKHRIETQIE
IDCSEKHYRNNFTMFTGYRLDQPIPFSSEIMTQSLELHSPPSAFEYGKYK
ICSTAYMLAEPRFKTIKCGYLEVIPSPLFIDVVGGNSVQAGTSRNYVVNT
TLTYDPDEYRGLQFYFLCRDFNDPEFNLTYHNVSTHLEESRPGIVPITAA
NDNGGCYGTGPGKLKTVTVYDRMTRLSTSQMRVGKSVELSVCAYSSMPED
KPRFQCSKQTLTIIEGDPPNIYQLGIINHGVTVAHNDKHMVQGLCKEDES
CKDNGRPIIWEWVLEKCAGEHAPCTNVSAADYTRMVETPRKGVYYGARRG
EYDSDTWYRLYTYAYRTDTVYGVASSLFYVNSPPYNGTCRSAKDSYILLV
GATELSCQYWTDANLPLTYSFYTVKNSVAKEFCRSYNPICNASLPAGNPM
DDYKLTVFVNVKDSRGGLTTYPINVTVQPPPDIDASISDINGALSGEDSR
LNVLQASGNIVEMTNDIYVFSSLINLAPDMPSNNTANMTTEEKHEIMDIG
LNRIKLRDQLANFTMSINTSDIEQQNFLTGTMSGVLQKPNEVSPDLQNQV
LSKAEDCMKSMSTNIGALDSAGQILAVTGVANMVQKSMAASSLMTNVQKG
NDSDLMAMKSLGSGNTSALTGNVNKARSQIDGLQSMLGQTVLPGGDTVQI
ELDGLSLGVGKSLPGTTATSFGAGSVSINFNAKMLEDPNLSLQEQSEEFT
EVKIVQMENPFGWDETSSKIKSKMTGINMAGKNGPKSVTGTPEPMELWIE
NHPLPVNESEIFEMKNNNDTKNYSSMSVEDNGEQWSYHVTEIRNESARIV
IDLFNKTYCSSFTVYMRQDKQPTTEKYLMKWSLPNNETCKWKNESEHIGE
SINLLSDENQDEFECQLATNLIFISDKEGLDGDFHFGLHCIPWEIKIQKE
NLESSDIHGDGNSRKRRSTIIDVDKVDTEYCVVIKPPPPTPAPTLGPGVM
VPNDPVYTEASLNYTFDITKAKCLFWNETTETFGSDGCWVGSLTTPERTQ
CLCTHLTDFGGDVMVAPNPIDMGAVFEGLKNLGDNLGVLMVILTIFLVYI
LLCVWSRKKDRKDDIDKRLVTVDCTSGDESQQSLLLNIITGAGDGSGTTA
RVSCEIMGSKGKTGIIPLTYQDKSLFKTRSAVAIKVLLSQDIGDLETIRV
FHDNSGKSPHWYLRSILITDIQTKKEYPFIYDSWLGVAETQNPTIDTTLK
LADEKDMKKFHLVFATKISQGLLDGHIWFSIFLRPKRSSFTRVRRLSACL
ALLFLTMLTNAMFFGVGDNPANRKIVWLGEFKINFTGIMIGIQSSLIVII
PSVIIIEIFRRVAPKKEKKDKVENASEEFEDAEAIEASQENQTKEKEPFM
FPNWFQYIGYFFVVASSGSSALLCFFYSMMWGPKKSNEWLASMFAGFFQS
VLVIQPIKAVFVAILFAAICRKPVSERQPKEEELRRKPLKKDKKKYVSQS
QKQLTDEELDEEIEERAGVDGLIDADEVPIIRPSDTFLERCRKARIREKM
TGVVFKDICVYLIFLGLVAKLAYGEKDMHTYYFREDMMNMFQQSKYQNGP
VFDLVSNHGYMYSWVRDTLVPSIFSGPWYNDEMPKYQGFIDNHQNYLVSI
PRLRQSRVPLNSCPIPDDFASLINHCEKFYDMTDEETGTYQTSWKPLNKT
NPETWSKRKRRDTSAVWIAQNPDSEVEMERSRRGRRNTDAGTGTSTTTPS
QYQKMTTGSGRNKQLRRRKLMIQNNGGGSSNLPIYYVNPEALLPDGTVVS
CKDRWEFFSSSELRGFPVPGRVTTYGGGGYVANLGYNEETSWTVLADLHS
KNWFDKQTRAAFVEFTVYNANVNLFLTAFLYTETLPTGGAFPWADFKVFN
GYRYSAKEGLQSLWAELVFICFITFFAIREIRKMIRFKKAYFTSFFNWIE
VVLMPLYLIMFGLIVIRWLTTAENIKSFKHNPKDFVSFQYSAAADSALMA
VIGIVCFLLNIKFLKLLQFAKLFFVTGQVIKAFAYPLTFFMIPFTLYFLL
FCWCGHLGFGAQNENYQTIIRSIVTQFLHLLGATDFDGVRDASPIFGPMY
YIAYAAFMMFIVFNIFMAIICEAIDEDYDEEFEKQAGDIQMVEFLTKKVK
DIIGIEDVELDLDADGEDLPEEKLKSTEKTMEDFDDTIERLYHLVDKMKV
PETGVAEEDTESYGPAEQTSIEPFEMIDKVDDDDGVQASAKERPNSPYVP
EATDERPKSPNESEANDERPNSPDGTEANDERPNSPDDLLLQ Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 2165..2192 |
| None | No IPR available | GENE3D | 1.20.120.350 | | coord: 2893..2984
e-value: 0.015
score: 14.0
coord: 2226..2825
e-value: 3.2E-7
score: 29.3 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 3002..3092 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 2490..2564 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 2280..2309 |
| IPR000203 | GPS motif | SMART | SM00303 | GPS_3 | coord: 1819..1868
e-value: 1.6E-8
score: 44.4 |
| IPR000203 | GPS motif | PFAM | PF01825 | GPS | coord: 1822..1859
e-value: 1.4E-5
score: 25.6 |
| IPR000203 | GPS motif | PROSITE | PS50221 | GPS | coord: 1820..1869
score: 10.886 |
| IPR001024 | PLAT/LH2 domain | SMART | SM00308 | LH2_4 | coord: 1932..2051
e-value: 8.7E-6
score: 34.4 |
| IPR001024 | PLAT/LH2 domain | PFAM | PF01477 | PLAT | coord: 1936..2039
e-value: 3.1E-14
score: 53.4 |
| IPR001024 | PLAT/LH2 domain | GENE3D | 2.60.60.20 | | coord: 1935..2060
e-value: 8.1E-24
score: 83.6 |
| IPR001024 | PLAT/LH2 domain | PROSITE | PS50095 | PLAT | coord: 1932..2049
score: 29.125 |
| IPR001024 | PLAT/LH2 domain | SUPERFAMILY | 49723 | Lipase/lipooxygenase domain (PLAT/LH2 domain) | coord: 1935..2041 |
| IPR002859 | PKD/REJ-like domain | PFAM | PF02010 | REJ | coord: 848..1314
e-value: 2.9E-44
score: 151.5 |
| IPR013122 | Polycystin cation channel, PKD1/PKD2 | PFAM | PF08016 | PKD_channel | coord: 2403..2513
e-value: 1.7E-11
score: 43.4
coord: 2604..2924
e-value: 4.5E-66
score: 223.2 |
Blast
BLAST of TCONS_00062242-protein vs. Swiss-Prot (Human)
Match: PK1L2 (Polycystic kidney disease protein 1-like 2 OS=Homo sapiens GN=PKD1L2 PE=1 SV=4) HSP 1 Score: 227.639 bits (579), Expect = 3.905e-59 Identity = 128/373 (34.32%), Postives = 214/373 (57.37%), Query Frame = 0
Query: 1800 MVPNDPVYTEASLNYTFDITK--AKCLFWNETTETFGSDGCWVGSLTTPERTQCLCTHLTDFGGDVMVAPNPIDMGAVFEGLKNLGDNLGVLMVILTIFLVYILLCVWSRKKDRKDDIDKRLVTVDCTSGDESQQSLLLNIITGAGDGSGTTARVSCEIMGSKGKTGIIPLTYQDKSLFKTRSAVAIKVLLSQDIGDLETIRVFHDNSGKSPHWYLRSILITDIQTKKEYPFIYDSWLGVAETQNPTIDTTLKLADEKDMKKFHLVFATKISQGLLDGHIWFSIFLRPKRSSFTRVRRLSACLALLFLTMLTNAMFFGVGDNPANRKIVWLGEFKINFTGIMIGIQSSLIVIIPSVIIIEIFRRVAPKKEKKD 2170
+VP + + T IT + C+FW+E ET+ GC VG T+P +T CLC HLT FG +V N I++ E DN V+ + + +VY+L+ +W+R+KD +D + VTV + +Q L+ + TG G+ T+++V+ + G G+ L D +F+ + A + +G+L ++R++HDNSG P WY+ +L+ D+ +++ F+ +SWL + + +D +A E+D K+F +F K S G DGHIW+SIF R RSSFTRV+R+S C +LL TMLT+ MF+GV +PA +K+ LG+ + + +MIG++SS+++ +++I++IF+ P+ K+
Sbjct: 1257 VVPESDLEPAPGRDLTVGITTFLSHCVFWDEVQETWDDSGCQVGPRTSPYQTHCLCNHLTFFGSTFLVMSNAINIHQTAELFATFEDNPVVVTTVGCLCVVYVLVVIWARRKDAQDQAKVK-VTVLEDNDPFAQYHYLVTVYTGHRRGAATSSKVTVTLYGLDGEREPHHLADPDTPVFERGAVDAFLLSTLFPLGELRSLRLWHDNSGDRPSWYVSRVLVYDLVMDRKWYFLCNSWLSI-NVGDCVLDKVFPVATEQDRKQFSHLFFMKTSAGFQDGHIWYSIFSRCARSSFTRVQRVSCCFSLLLCTMLTSIMFWGVPKDPAEQKMD-LGKIEFTWQEVMIGLESSILMFPINLLIVQIFQNTRPRVAKEQ 1626 HSP 2 Score: 166.392 bits (420), Expect = 1.634e-40 Identity = 100/353 (28.33%), Postives = 184/353 (52.12%), Query Frame = 0
Query: 2605 WEFFSSSELRGFPVPGRVTTYGGGGYVANLGYNEETSWTVLADLHSKNWFDKQTRAAFVEFTVYNANVNLFLTAFLYTETLPTGGAFPWADFKVFNGYRYSAKEGLQSLWAELVFICFITFFAIREIRKMIRFKKAYFTSFFNWIEVVLMPLYLIMFGLIVIRWLTTAENIKSFKHNPKDFVSFQYSAAADSALMAVIGIVCFLLNIKFLKLLQF-AKLFFVTGQVIKAFAYPLTFFMIPFTLYFLLFCWCGHLGFGAQNENYQTIIRSIVTQFLHLLGATDFDGVRDASPIFGPMYYIAYAAFMMFIVFNIFMAIICEAIDEDYDEEFEKQAGDIQMVEFLTKKVKDIIGIE 2956
W++ S + +G+P+ G++T Y GGGYV LG + + +L L W D TRA FVE TVYNANVNLF L ET G F A + Y ++ + AEL++ F+ ++ + + ++M + YF S +N +E+ ++ + V R + +++ +++ ++ +SF +AAAD+AL +I + L +K LL+ K+ +T + +A+ ++ FMI L + +L FG + +Y+T+ + T LG +++ V D SP+ G + FM F+V N+F+++I A E ++++ + + + ++V+ L K+ +GI+
Sbjct: 2079 WQYQSQDQRQGYPIWGKLTVYRGGGYVVPLGTDRQKHVKILRYLFDNTWLDALTRAVFVESTVYNANVNLFCIVTLTLETSALGTFFTHAALQSLRLYPFTDGWHPFVVAAELIYFLFLLYYMVVQGKRMSKETWGYFCSKWNLLELAIILASWSALAVFVKRAVLAERDLQRCRNHREEGISFSETAAADAALGYIIAFLVLLSTVKLWHLLRLNPKMNMITAALRRAWG-DISGFMIVILTMLLAYSIASNLIFGWKLRSYKTLFDAAETMVSLQLGIFNYEEVLDYSPVLGSFLIGSCIVFMTFVVLNLFISVILVAFSE--EQKYYQLSEEGEIVDLLLMKILSFLGIK 2428
The following BLAST results are available for this feature:
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