TCONS_00062279-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00062279-protein
Unique Name	TCONS_00062279-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	608

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00062279-protein ID=TCONS_00062279-protein|Name=TCONS_00062279-protein|organism=Clytia hemisphaerica|type=polypeptide|length=608bp
MAEKDYSPLSIQVVRGLNDKLYEKRKTAALEIERMVKEFQANNDVKQIRK
LITILTDEFAVSHNPHSRKGGLIGLAATAIALGKDATFYLSSLVPPVLSC
FSDQDSRVRYYGCEALYNIAKVARGSILPYFNEIFDGLSKLAADPDPNVK
NGAELLDRLIKDVVTESSNFDLHSFVPILRERIYTTNPHAKQFIVSWLSA
LDAVPELDLLVYLPEFLDGLFNIFRDKSGEIRKMCEFILGEFLKDIKKNH
STVNFAAMVNNLVHHSQSEDEIIQFTAVTWLKEFVSLSGRTMLPFCALIL
SSILPCVSYDQPKQHIREVAKLVNNGLMKLITTEDDYDVNEKETITKMAS
QIDLSRVVEVLTRQLSHKQIHTRIAVLRWVLQLHMKTPNRLFQHIEQLFP
ALVKTLSDPSDEVVLLDLEVLADISASSAGPPRSQGSTLYEVTNTPSQKH
TLNSYFTKFMNNLLKIFSTDKNLLEERGPFIIRHLCLLLNAQNIYCALAE
ILTQEKDDLKFASIMVNNLNMILLTSSELFELRLKLKDLNSEDSCHLFTI
LYRCWCHNPVATVSLCFLSQTYKHTCDLLLKFGNLEVNAEFLTQVDKLVQ
MIESPIFT

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_039029	XLOC_039029	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00062279	TCONS_00062279	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR032878	Vac14_Fab1-bd
IPR021841	VAC14_Fig4p-bd
IPR011989	ARM-like
IPR021133	HEAT_type_2
IPR016024	ARM-type_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0005488	binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032878	Vacuole morphology and inheritance protein 14, Fab1-binding region	PFAM	PF12755	Vac14_Fab1_bd	coord: 67..162 e-value: 1.1E-41 score: 141.2
IPR021841	Vacuolar protein 14 C-terminal Fig4-binding domain	PFAM	PF11916	Vac14_Fig4_bd	coord: 472..608 e-value: 8.4E-55 score: 185.1
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 342..602 e-value: 7.7E-11 score: 40.4 coord: 157..341 e-value: 4.4E-15 score: 54.5 coord: 4..156 e-value: 7.5E-17 score: 60.3
IPR021133	HEAT, type 2	PROSITE	PS50077	HEAT_REPEAT	coord: 93..128 score: 8.663
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 13..581

Blast

[Close]

BLAST of TCONS_00062279-protein vs. Swiss-Prot (Human)
Match: VAC14 (Protein VAC14 homolog OS=Homo sapiens GN=VAC14 PE=1 SV=1)

HSP 1 Score: 718.383 bits (1853), Expect = 0.000e+0
Identity = 368/676 (54.44%), Postives = 474/676 (70.12%), Query Frame = 0

Query:    3 EKDYSPLSIQVVRGLNDKLYEKRKTAALEIERMVKEFQANNDVKQIRKLITILTDEFAVSHNPHSRKGGLIGLAATAIALGKDATFYLSSLVPPVLSCFSDQDSRVRYYGCEALYNIAKVARGSILPYFNEIFDGLSKLAADPDPNVKNGAELLDRLIKDVVTESSNFDLHSFVPILRERIYTTNPHAKQFIVSWLSALDAVPELDLLVYLPEFLDGLFNIFRDKSGEIRKMCEFILGEFLKDIKKNHSTVNFAAMVNNLVHHSQSEDEIIQFTAVTWLKEFVSLSGRTMLPFCALILSSILPCVSYDQPKQHIREVAKLVNNGLMKLITTEDDY----------------DVNEKETITKMAS--------------------------QIDLSRVVEVLTRQLSHKQIH--TRIAVLRWVLQLHMKTPNRLFQHIEQLFPALVKTLSDPSDEVVLLDLEVLADISASSAG---------PPRSQGSTLYEVTNTPSQKH-----------------TLNSYFTKFMNNLLKIFSTDKNLLEERGPFIIRHLCLLLNAQNIYCALAEILTQEKDDLKFASIMVNNLNMILLTSSELFELRLKLKDLNSEDSCHLFTILYRCWCHNPVATVSLCFLSQTYKHTCDLLLKFGNLEVNAEFLTQVDKLVQMIESPIFT 608
            EKD++PL+  +VR LNDKLYEKRK AALEIE++V+EF A N+  QI+ +I  L+ EFA+S +PHSRKGGLIGLAA +IALGKD+  YL  L+ PVL+CF+D DSR+RYY CEALYNI KVARG++LP+FN +FDGLSKLAADPDPNVK+G+ELLDRL+KD+VTES+ FDL SF+P+LRERIY+ N +A+QFI+SW+  L++VP+++LL YLPE LDGLF I  D   EIRKMCE +LGEFLK+IKKN S+V FA M N LV H Q+ D++IQ TA+ W++EF+ L+GR MLP+ + IL+++LPC++YD  K+ I+EVA + N  LMKL+T EDD                 D   K+  T                               + L  +V+VL   LS   I   TRIAVL+W+  L++KTP ++F+H + LFP L++TLSD SDEV+L DLEVLA+I++S AG          P  Q S       TP +                   T+NSYF KFM NLLK FS+++ LLE RGPFIIR LCLLLNA+NI+ ++A+IL +E +DLKFAS MV+ LN ILLTS+ELF+LR +LKDL + +S +LF  LYR WCHNPV TVSLCFL+Q Y+H  DL+ KFG+LEV  +FL +VDKLVQ+IE PIFT
Sbjct:    4 EKDFAPLTPNIVRALNDKLYEKRKVAALEIEKLVREFVAQNNTVQIKHVIQTLSQEFALSQHPHSRKGGLIGLAACSIALGKDSGLYLKELIEPVLTCFNDADSRLRYYACEALYNIVKVARGAVLPHFNVLFDGLSKLAADPDPNVKSGSELLDRLLKDIVTESNKFDLVSFIPLLRERIYSNNQYARQFIISWILVLESVPDINLLDYLPEILDGLFQILGDNGKEIRKMCEVVLGEFLKEIKKNPSSVKFAEMANILVIHCQTTDDLIQLTAMCWMREFIQLAGRVMLPYSSGILTAVLPCLAYDDRKKSIKEVANVCNQSLMKLVTPEDDELDELRPGQRQAEPTPDDALPKQEGTASGGPDGSCDSSFSSGISVFTAASTERAPVTLHLDGIVQVLNCHLSDTAIGMMTRIAVLKWLYHLYIKTPRKMFRHTDSLFPILLQTLSDESDEVILKDLEVLAEIASSPAGQTDDPGPLDGPDLQASHSELQVPTPGRAGLLNTSGTKGLECSPSTPTMNSYFYKFMINLLKRFSSERKLLEVRGPFIIRQLCLLLNAENIFHSMADILLRE-EDLKFASTMVHALNTILLTSTELFQLRNQLKDLKTLESQNLFCCLYRSWCHNPVTTVSLCFLTQNYRHAYDLIQKFGDLEVTVDFLAEVDKLVQLIECPIFT 678

The following BLAST results are available for this feature:

BLAST of TCONS_00062279-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00062279-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
VAC14	0.000e+0	54.44	Protein VAC14 homolog OS=Homo sapiens GN=VAC14 PE=...	[more]

You are here

TCONS_00062279-protein (polypeptide) - C. hemisphaerica