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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00062411-protein ID=TCONS_00062411-protein|Name=TCONS_00062411-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1428bp
MGADMELVRLFNMELSSIYEGKPPVSKAKMATITRYAVKALKYYKHIVHS
VEKFIHKCHNEYKLPALYVLDSIIRQSRHQFGPEKDLFGPRFEKNIKFLF
QHIYQCPSEDKPKVVRVLNLWQKNGIYSPDVISPLIDMASQSQKSLQSAI
SKQKKMKAAANVQEDDAFDFVSGFEVNEERPSSSKKKRKGISMSQDDEIK
VLKAQLEQQKKQQELLQQQLQMQMMQTKQQSLQMQIQQQDQLRSKMQEQA
TNSGPNPIEQPNLNILNQIQDLQKQLEKDKVELASLAVNNEKDPNHASNN
NSHPIENQTQFLENIQQLIQNAKGLVPSKDPRSSDDRQGFDYKDQEQDRM
AQQQRRSPNNPQRFRDDPYIKNGPPPTKKPLLNWEEERRPSYDQDDAMQI
DDDDYEPSFQQPSHQEDPRKQQQQSQLKPEEVSEEQFKQQKEKEKKLRDK
KLLPSPRNGCVTIASVTVWVGRLPKYFSKDALLNHFNEYADVKNVDMIES
RGCAFVTMATRFDADSALRYMKHKRIDGADVKLNWGKTKALFDYSQYWEE
KSGCAFVPWDQVNLPKLVSLVDTYLIDEDTLPPGMNLPSEKDEPSTPSKD
EPQQVIPVAGVPPFIPGFPPGFFPPAGLLPGMPPAGLSGRLPFPGMLPPN
ILQLQNLQRQSIQGLVGGERPQLQGLGERPPLQPGLQQGMGERPPLQPGL
QQGMGERPPLQGMPRPPIQGLGERPPFQNMAERPPFQNMGERPPFQQNIG
ERPLLQQNNMGERPPLQGLGQRPPFQNMGDRQSLLQSLGQQPRPGFGEHP
QRPGFDENRPRPGQPMGGPPQRPSFTPAFGGDSFQNVRPRQEGPISPGLN
NIRPPVSFGERPPVQRHLFGGNLLFNGLNQRPQIQNLLSQNQRFNGPPEN
RFTNIRPVAPEESQISPNAQDAGQRPPWLQNRDQVGNMGNQPSRNEETVE
KNVQNQRNLTNLPTAAFLLNLVNQHKEQQASTDNQTQPGDEESQPPPQRE
RERSPTRDRSPVRDDRDRERGDRRRERSRERRDSDRDHRGRRDRSSERSS
RSRRDDRGRERDYRGSDRERGSDRDRDERGRGSDRDERSRRSDRDRSGDR
RRERSSERKSDRDRYERRGRDEDRYRSRDRRERSRERGRDRDRSQEESRE
RNEDELLASRSESAKKQDEVTSGDTVVATDQANSASTGDRPTKTAEDLYD
PMEALDSPATTAQKESAPQETAQLETAQQETTQQEPSQTEETESEANQRE
TEPMKPDQDEKIMQESAQNETTGQETAQNETSEQETDQKETAEPEMEHEK
PIDPQLEETKETMETERSESPIFPLVKEDDAIFPDAADEEDAADESMEGE
SETSQQANEPENQEQESKPDDPEQSASIEERTEENVEVFSTNTNENRQAE
EVEVDTEPSEVSDEVTASEDTRARVEGE Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 192..230 |
| None | No IPR available | COILS | Coil | Coil | coord: 262..289 |
| None | No IPR available | GENE3D | 3.30.70.330 | | coord: 408..542
e-value: 3.5E-18
score: 65.2 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 324..452 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 236..261 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 670..856 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 581..604 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 912..953 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 975..1428 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 175..194 |
| None | No IPR available | CDD | cd03562 | CID | coord: 8..129
e-value: 6.1277E-31
score: 118.854 |
| IPR000504 | RNA recognition motif domain | SMART | SM00360 | rrm1_1 | coord: 467..534
e-value: 2.0E-13
score: 60.6 |
| IPR000504 | RNA recognition motif domain | PFAM | PF00076 | RRM_1 | coord: 468..531
e-value: 1.5E-10
score: 40.6 |
| IPR000504 | RNA recognition motif domain | PROSITE | PS50102 | RRM | coord: 466..538
score: 13.515 |
| IPR000504 | RNA recognition motif domain | SUPERFAMILY | 54928 | RNA-binding domain, RBD | coord: 463..540 |
| IPR006569 | CID domain | SMART | SM00582 | 558neu5 | coord: 10..140
e-value: 5.9E-36
score: 135.4 |
| IPR006569 | CID domain | PROSITE | PS51391 | CID | coord: 3..143
score: 34.332 |
| IPR006903 | RNA polymerase II-binding domain | PFAM | PF04818 | CTD_bind | coord: 63..127
e-value: 1.6E-16
score: 60.7 |
| IPR008942 | ENTH/VHS | GENE3D | 1.25.40.90 | | coord: 5..149
e-value: 2.1E-36
score: 124.4 |
| IPR008942 | ENTH/VHS | SUPERFAMILY | 48464 | ENTH/VHS domain | coord: 2..139 |
Blast
BLAST of TCONS_00062411-protein vs. Swiss-Prot (Human)
Match: SFR15 (Splicing factor, arginine/serine-rich 15 OS=Homo sapiens GN=SCAF4 PE=1 SV=3) HSP 1 Score: 202.986 bits (515), Expect = 8.649e-53 Identity = 87/145 (60.00%), Postives = 112/145 (77.24%), Query Frame = 0
Query: 5 MELVRLFNMELSSIYEGKPPVSKAKMATITRYAVKALKYYKHIVHSVEKFIHKCHNEYKLPALYVLDSIIRQSRHQFGPEKDLFGPRFEKNIKFLFQHIYQCPSEDKPKVVRVLNLWQKNGIYSPDVISPLIDMASQSQKSLQSA 149
M+ V FN EL S+ + KPP+S+AKM IT+ A+KA+K YKH+V VEKFI KC EYK+P LYV+DSI+RQSRHQFG +KD+FGPRF KNI FQ++Y CPSEDK K+VRVLNLWQKNG++ ++I PL+DMA+ + + A
Sbjct: 1 MDAVNAFNQELFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKVPGLYVIDSIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSKIVRVLNLWQKNGVFKIEIIQPLLDMAAGTSNAAPVA 145 HSP 2 Score: 95.9005 bits (237), Expect = 9.346e-20 Identity = 43/137 (31.39%), Postives = 79/137 (57.66%), Query Frame = 0
Query: 450 KKLLPSPRNGCVTIASVTVWVGRLPKYFSKDALLNHFNEYADVKNVDMIESRGCAFVTMATRFDADSALRYMK--HKRIDGADVKLNWGKTKAL-FDYSQYWEEKSGCAFVPWDQVNLPKLVSLVDTYLIDEDTLPP 583
+K LP + ++ S T+WVG+L K ++ + + E+ +++++MI RGCA++ M R DA AL+ + + +++ +K+ W K + DY QYW+ + G ++PWD+V +L S + ++D DTL P
Sbjct: 492 QKGLPQVKPETASVCSTTLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCAYIVMVHRQDAYRALQKLSRGNYKVNQKSIKIAWALNKGIKADYKQYWDVELGVTYIPWDKVKPEELESFCEGGMLDSDTLNP 628
The following BLAST results are available for this feature:
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