TCONS_00062415-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00062415-protein
Unique NameTCONS_00062415-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length277

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00062415-protein ID=TCONS_00062415-protein|Name=TCONS_00062415-protein|organism=Clytia hemisphaerica|type=polypeptide|length=277bp
XQDKYYDNQKLWESMKWNAGSIAILLGWSNLLLYLKRFPFFGLYVVMFME
VFKSLISVLPLFTTFIIGFALSFYVLMDGETAFKHVGRAIMKTGVMTIGE
FEFNGIMTEYYAKNGVRDKNVLPYPILTYLIFTLFLVLMPILTMNFLVGL
AAGDIEAVRKNAYLRILRAQVHILKTIELSYPKWLLQRFYRDHVNEYIDT
KLTFWERLRKWWKSSDYDFVIEEQTDAGENELKMINSLESNGVEIEKQKK
KLKRLCEILDEQKERFDYLFEKFELED
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_039102XLOC_039102Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00062415TCONS_00062415Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005821Ion_trans_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005216ion channel activity
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
GO:0006811ion transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016020 membrane
molecular_function GO:0005216 ion channel activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 235..265
IPR005821Ion transport domainPFAMPF00520Ion_transcoord: 17..160
e-value: 3.8E-8
score: 32.8

Blast
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BLAST of TCONS_00062415-protein vs. Swiss-Prot (Human)
Match: TRPA1 (Transient receptor potential cation channel subfamily A member 1 OS=Homo sapiens GN=TRPA1 PE=1 SV=3)

HSP 1 Score: 117.472 bits (293), Expect = 1.556e-29
Identity = 79/262 (30.15%), Postives = 137/262 (52.29%), Query Frame = 0 
Query:   15 MKWNAGSIAILLGWSNLLLYLKRFPFFGLYVVMFMEVFKSLISVLPLFTTFIIGFALSFYVLMDGETAFKHVGRAIMKTGVMTIGEFEFNGIMTEYYAKNGVRDKNVLPYPILTYLIFTLFLVLMPILTMNFLVGLAAGDIEAVRKNAYLRILRAQVHILKTIELSYPKWLLQRFYRDHVNEYIDTKLTF-WERLRKWWKSSDYDFVIEEQTDAGENELKMINSLESNGVEIEKQKKKLKRLCEILDEQKERFDYLFEKFEL 275
            ++W  G+IA+   W N LLYL+RF   G+++VM   + K+L+    +F   ++ F LSFY+L++ +  F     +I++T  M +G+  +     E Y +N       L +P+L++     F + +PI+ MN L+GLA GDI  V+K+A L+ +  QV +  ++E   P W L++         +D K T  +    +      + F     T  GE   ++ N+ +S  +EI KQK +LK L  +L++Q E    + +K E+
Sbjct:  830 LQWQCGAIAVYFYWMNFLLYLQRFENCGIFIVMLEVILKTLLRSTVVFIFLLLAFGLSFYILLNLQDPFSSPLLSIIQTFSMMLGDINYRESFLEPYLRNE------LAHPVLSFAQLVSFTIFVPIVLMNLLIGLAVGDIAEVQKHASLKRIAMQVELHTSLEKKLPLWFLRK---------VDQKSTIVYPNKPRSGGMLFHIFCFLFCT--GEIRQEIPNADKSLEMEILKQKYRLKDLTFLLEKQHELIKLIIQKMEI 1074
The following BLAST results are available for this feature:
BLAST of TCONS_00062415-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRPA11.556e-2930.15Transient receptor potential cation channel subfam... [more]
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