TCONS_00062442-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00062442-protein
Unique NameTCONS_00062442-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length755

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00062442-protein ID=TCONS_00062442-protein|Name=TCONS_00062442-protein|organism=Clytia hemisphaerica|type=polypeptide|length=755bp
MNDADDEIDDNEFMNIREMMELFAHIFFHNGVRGCPHHGMDCCDYEDDEY
FYSDDEYYDYTDEESEDELLDSIAQRLRNKYEQRKYKPKDRMQTQRHNIT
EEEALRNARELIEEEEQEKEREEKKKAKRKKKKEKKKQKEKEKKETEINT
TTEKDEEILTKKLNKENSNPNNQNKNISDEKPTVVNQKQQQQQQIPKNNK
QDNNTSGKKSKGNENSNKKNPKNKQDSGKKDNKNKNNKNIEGDHDEDLID
TNSAFFARAASKAPTVSNEVTSQQHQKENTSSSSNNNKKKKGGANSGGSG
TTNHIQQPQTQQPLHNNHTTENNNSKKKKVPPPLSTTSTSSSTSNTTTNN
QKNTSTSKNTTSQKSHISPRNSEPSSQKSPPLTNGDHKPDDIILQSRQVA
VQGNQLAQQNDYTGAVEMFTKAISLDPTDFRFFGNRSYCFDRLENYTKAL
VDSDAAIKLAPEWPKGFFRKGRALTGLNRFQEAEQVFQQVLKLDPGCEDA
QFELARVRVQILIDMGFTPSLSEQAVRTYSTVQQALEALLAGKVSDEEGS
DEVYFSEDDEPPASPTYHTVQNNNKKSNNKQPKAPPQPKCTALWVGNVDP
QLVTEKQMSQLFGKCGKVSSVRILPHKYCAFVNYMDPKSAVAAMEKLQGA
ALGNQKLLLRFPNNPPPGSIVPEPLSVNTKTSASSATQQAKTSPSISESS
NDSSKASGPVNGNECYFWRTTGCVFENQCRYKHVRGHKGVDLSKVQAKYG
TKLSS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_039110XLOC_039110Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00062442TCONS_00062442Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR000504RRM_dom
IPR011990TPR-like_helical_dom
IPR013105TPR_2
IPR013026TPR-contain_dom
IPR000571Znf_CCCH
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0003676nucleic acid binding
GO:0046872metal ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 98..154
NoneNo IPR availableGENE3D1.10.8.10coord: 510..574
e-value: 1.3E-6
score: 28.1
NoneNo IPR availableGENE3D3.30.70.330coord: 575..664
e-value: 3.7E-19
score: 68.2
NoneNo IPR availableGENE3D1.20.960.10coord: 388..423
e-value: 4.1E-5
score: 22.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 114..389
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 663..709
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 82..102
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 550..589
NoneNo IPR availableCDDcd00590RRM_SFcoord: 593..657
e-value: 3.75398E-13
score: 65.0189
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 396..429
e-value: 0.076
score: 22.1
coord: 464..497
e-value: 5.0E-4
score: 29.4
coord: 430..463
e-value: 19.0
score: 12.4
IPR019734Tetratricopeptide repeatPFAMPF13181TPR_8coord: 407..429
e-value: 0.13
score: 12.5
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 396..429
score: 10.119
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 464..497
score: 9.706
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 430..463
score: 5.192
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 592..660
e-value: 2.2E-16
score: 70.4
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 593..657
e-value: 9.8E-13
score: 47.6
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 591..664
score: 13.481
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 568..668
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 424..453
e-value: 5.4E-7
score: 29.2
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 454..509
e-value: 4.2E-12
score: 45.6
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 400..507
IPR013105Tetratricopeptide repeat 2PFAMPF07719TPR_2coord: 465..496
e-value: 4.6E-5
score: 23.1
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 396..497
score: 20.646
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 709..736
score: 9.779

Blast
[Close]
BLAST of TCONS_00062442-protein vs. Swiss-Prot (Human)
Match: TTC31 (Tetratricopeptide repeat protein 31 OS=Homo sapiens GN=TTC31 PE=1 SV=3)

HSP 1 Score: 108.612 bits (270), Expect = 8.740e-25
Identity = 48/98 (48.98%), Postives = 64/98 (65.31%), Query Frame = 0 
Query:  395 QSRQVAVQGNQLAQQNDYTGAVEMFTKAISLDPTDFRFFGNRSYCFDRLENYTKALVDSDAAIKLAPEWPKGFFRKGRALTGLNRFQEAEQVFQQVLK 492
            QS+++A  G   AQ   Y  AV +FT+A+ L+P D R FGNRS+C +RL     AL D+  A+ L P WP+G FR G+AL GL RF+EA  VFQ+ L+
Sbjct:  304 QSQELAKLGTSFAQNGFYHEAVVLFTQALKLNPQDHRLFGNRSFCHERLGQPAWALADAQVALTLRPGWPRGLFRLGKALMGLQRFREAAAVFQETLR 401
The following BLAST results are available for this feature:
BLAST of TCONS_00062442-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TTC318.740e-2548.98Tetratricopeptide repeat protein 31 OS=Homo sapien... [more]
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