TCONS_00062513-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00062513-protein
Unique NameTCONS_00062513-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length747

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00062513-protein ID=TCONS_00062513-protein|Name=TCONS_00062513-protein|organism=Clytia hemisphaerica|type=polypeptide|length=747bp
MDNHLVNYNYGSKSSFCPSSNFINTIRIQDNEIKQQQQLPRSIKGKWTKS
EDEKLKTLCVSLGTDNWSAIGNHFPQRTEVQCQQRWRKVLDPSLIKGAWT
KEEDDLVVQLVNQYGPKKWSLIASHLQGRIGKQCRERWHNHLNPNVNKQA
WSEEEDRLIYEAHSQIGNRWADIAKLLPGRTDNAIKNHWNSTMKRRFEPG
FRQRTKREERRIIAAVADKENVYPRCTSSSTVTGRDQLISSQSLVSKPMH
DLLPICDEDGGINIKLEPEDHNNQFSDIEPDPDLVITPLKDIKNFSDILA
EMGGVDGILQTSQMHPLADDNKENFIPLIETQPHEQQNTTTTQNRSLTSI
PGRYSMPPSILRRSKKFPFLDASNNTFSKDESIVSYQQLGFSPSAFLNTS
NSYNGETSKEMVTSTPAKGLTTTPITPSIMITPLVDEIKFNHGSSSKKRK
PFFSSATSSLKKPKKSLVSTTPRTPTPLRTSKKEQVCTDTKLATIDEISK
LLMKKANTSSGTTPDHDYAKLTELNSIAVDSSNDFSSGSSKTSLRRTLFD
ETPCQNSMVRPLGVNLFTEKELNAIEQMSTCFTPQKRKDNLTTTTAAESK
EKSQHKVTFQDTLSSTSFVKKNDKGFSFILNSQQMPKMSLFQHPQQNKQQ
VAQRLKQLPGRQEIRILPLVGKPMKIPIRRLPPRNLKFADDSGQRQQLLS
RPKTNIRSTPTQGDAFRAVAFGQSHDQKFLTEQARLIMKEIQQASLI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_039173XLOC_039173Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00062513TCONS_00062513Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001005SANT/Myb
IPR017930Myb_dom
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainSMARTSM00717santcoord: 95..144
e-value: 1.6E-18
score: 77.6
coord: 147..195
e-value: 1.1E-16
score: 71.5
coord: 43..92
e-value: 6.8E-15
score: 65.5
IPR001005SANT/Myb domainPFAMPF00249Myb_DNA-bindingcoord: 44..90
e-value: 6.4E-14
score: 51.8
NoneNo IPR availablePFAMPF13921Myb_DNA-bind_6coord: 99..157
e-value: 1.4E-18
score: 66.8
NoneNo IPR availableGENE3D1.10.10.60coord: 147..223
e-value: 8.6E-22
score: 76.7
NoneNo IPR availableGENE3D1.10.10.60coord: 95..146
e-value: 1.7E-24
score: 84.7
coord: 34..94
e-value: 2.9E-18
score: 64.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 442..485
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 333..355
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 689..711
NoneNo IPR availableCDDcd00167SANTcoord: 46..90
e-value: 7.09909E-13
score: 63.3634
NoneNo IPR availableCDDcd00167SANTcoord: 98..142
e-value: 6.23927E-16
score: 72.223
NoneNo IPR availableCDDcd00167SANTcoord: 150..190
e-value: 4.69455E-12
score: 61.0522
IPR017930Myb domainPROSITEPS51294HTH_MYBcoord: 147..197
score: 22.064
IPR017930Myb domainPROSITEPS51294HTH_MYBcoord: 39..90
score: 14.055
IPR017930Myb domainPROSITEPS51294HTH_MYBcoord: 91..146
score: 31.922
IPR009057Homeobox domain-likeSUPERFAMILY46689Homeodomain-likecoord: 93..189
IPR009057Homeobox domain-likeSUPERFAMILY46689Homeodomain-likecoord: 45..100

Blast
[Close]
BLAST of TCONS_00062513-protein vs. Swiss-Prot (Human)
Match: MYB (Transcriptional activator Myb OS=Homo sapiens GN=MYB PE=1 SV=2)

HSP 1 Score: 262.307 bits (669), Expect = 1.267e-77
Identity = 112/172 (65.12%), Postives = 139/172 (80.81%), Query Frame = 0 
Query:   44 KGKWTKSEDEKLKTLCVSLGTDNWSAIGNHFPQRTEVQCQQRWRKVLDPSLIKGAWTKEEDDLVVQLVNQYGPKKWSLIASHLQGRIGKQCRERWHNHLNPNVNKQAWSEEEDRLIYEAHSQIGNRWADIAKLLPGRTDNAIKNHWNSTMKRRFE-PGFRQRTKREERRIIA 214
            K +WT+ EDEKLK L    GTD+W  I N+ P RT+VQCQ RW+KVL+P LIKG WTKEED  V++LV +YGPK+WS+IA HL+GRIGKQCRERWHNHLNP V K +W+EEEDR+IY+AH ++GNRWA+IAKLLPGRTDNAIKNHWNSTM+R+ E  G+ Q + +  +  +A
Sbjct:   40 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYLQESSKASQPAVA 211

HSP 2 Score: 82.4185 bits (202), Expect = 3.623e-16
Identity = 39/118 (33.05%), Postives = 62/118 (52.54%), Query Frame = 0 
Query:   40 PRSIKGKWTKSEDEKLKTLCVSLGTDNWSAIGNHFPQRTEVQCQQRWRKVLDPSLIKGAWTKEEDDLVVQLVNQYGPKKWSLIASHLQGRIGKQCRERWHNHLNPNVNKQAWSEEEDR 157
            P  IKG WTK ED+++  L    G   WS I  H   R   QC++RW   L+P + K +WT+EED ++ Q   + G  +W+ IA  L GR     +  W++ +   V ++ + +E  +
Sbjct:   88 PELIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLG-NRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYLQESSK 204
The following BLAST results are available for this feature:
BLAST of TCONS_00062513-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MYB1.267e-7765.12Transcriptional activator Myb OS=Homo sapiens GN=M... [more]
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