TCONS_00062708-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00062708-protein
Unique NameTCONS_00062708-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length404

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00062708-protein ID=TCONS_00062708-protein|Name=TCONS_00062708-protein|organism=Clytia hemisphaerica|type=polypeptide|length=404bp
MANGGVIHWFRKGLRLHDNPALINALESKLRLYPIFILDPWFVKNACVGV
NRWRFLQQTLTDLDQQLRRLGSRLLVVRGKPEVKFPELIKNWNVQKLTYE
IDTEPYSKIRDKKVDELAAEYKVEVSSHVSHTLYDVNKIIGKNKGQPPLT
YQKHELLIASLGPPPKSLDAPKNIPSDYQMPEDVLKNGDFDIPTLEELGV
CESDLNSCLYKGGETEGLKRLNSYICEEKKNWVADFEKPKTSPNSLEPST
TVLSPYLKFGCVSPRLMYERLQMVYKLKPKHSKPPVSLYGQLLWREFFYT
CGSAVQNFDQMKGNPICRQIDWDTNTEYLAAWREGRTGYPYIDAIMIQLR
QEGWIHHLARHSVACFLTRGDLYISWEEGMKVFEEYLLDADWSLNAANWM
WLSA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_039292XLOC_039292Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00062708TCONS_00062708Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006050DNA_photolyase_N
IPR014729Rossmann-like_a/b/a_fold
IPR005101Cryptochr/Photolyase_FAD-bd
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.579.10coord: 308..404
e-value: 7.4E-41
score: 139.1
NoneNo IPR availableGENE3D1.25.40.80coord: 145..307
e-value: 3.8E-37
score: 127.4
IPR006050DNA photolyase, N-terminalPFAMPF00875DNA_photolyasecoord: 6..153
e-value: 2.0E-42
score: 144.9
IPR006050DNA photolyase, N-terminalPROSITEPS51645PHR_CRY_ALPHA_BETAcoord: 4..133
score: 38.015
IPR006050DNA photolyase, N-terminalSUPERFAMILY52425Cryptochrome/photolyase, N-terminal domaincoord: 5..176
IPR014729Rossmann-like alpha/beta/alpha sandwich foldGENE3D3.40.50.620coord: 1..144
e-value: 1.5E-43
score: 147.8
IPR005101Cryptochrome/DNA photolyase, FAD-binding domainPFAMPF03441FAD_binding_7coord: 290..404
e-value: 2.6E-44
score: 151.0
IPR005101Cryptochrome/DNA photolyase, FAD-binding domainSUPERFAMILY48173Cryptochrome/photolyase FAD-binding domaincoord: 198..403

Blast
[Close]
BLAST of TCONS_00062708-protein vs. Swiss-Prot (Human)
Match: CRY1 (Cryptochrome-1 OS=Homo sapiens GN=CRY1 PE=1 SV=1)

HSP 1 Score: 465.307 bits (1196), Expect = 4.410e-161
Identity = 227/402 (56.47%), Postives = 287/402 (71.39%), Query Frame = 0 
Query:    6 VIHWFRKGLRLHDNPALINALESKLRLYPIFILDPWFVKNACVGVNRWRFLQQTLTDLDQQLRRLGSRLLVVRGKPEVKFPELIKNWNVQKLTYEIDTEPYSKIRDKKVDELAAEYKVEVSSHVSHTLYDVNKIIGKNKGQPPLTYQKHELLIASLGP---PPKSLDAPKNIPSDYQMPEDVLKNGDFDIPTLEELGVCESDLNSCLYKGGETEGLKRLNSYICEEKKNWVADFEKPKTSPNSLEPSTTVLSPYLKFGCVSPRLMYERLQMVYKLKPKHSKPPVSLYGQLLWREFFYTCGSAVQNFDQMKGNPICRQIDWDTNTEYLAAWREGRTGYPYIDAIMIQLRQEGWIHHLARHSVACFLTRGDLYISWEEGMKVFEEYLLDADWSLNAANWMWLSA 404
             +HWFRKGLRLHDNPAL   ++    +  ++ILDPWF  ++ VG+NRWRFL Q L DLD  LR+L SRL V+RG+P   FP L K WN+ KL+ E D+EP+ K RD  + +LA E  VEV   +SHTLYD++KII  N GQPPLTY++ + LI+ + P   P +++ +   +      P     +  + +P+LEELG     L+S ++ GGETE L RL  ++  E+K WVA+FE+P+ + NSL  S T LSPYL+FGC+S RL Y +L  +YK   K+S PP+SLYGQLLWREFFYT  +    FD+M+GNPIC QI WD N E LA W EGRTG+P+IDAIM QLRQEGWIHHLARH+VACFLTRGDL+ISWEEGMKVFEE LLDADWS+NA +WMWLS 
Sbjct:    5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITS--EVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHL--ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSC 402
The following BLAST results are available for this feature:
BLAST of TCONS_00062708-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CRY14.410e-16156.47Cryptochrome-1 OS=Homo sapiens GN=CRY1 PE=1 SV=1[more]
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