TCONS_00062708 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062708
Unique NameTCONS_00062708
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1518

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062708 ID=TCONS_00062708|Name=TCONS_00062708|organism=Clytia hemisphaerica|type=transcript|length=1518bp
TATCGATTGACGTCATAATGAGCTTTGTATAAAGCCCAAATTGCAgagaa
cgataaactcggtatacattCACACGTCATTCATCTGGATAAGGCTATCA
CTAtgtctcactaacattctgcAGAATGATAGTGTGAAGGTTTTGATTAC
AGACTAGGAACGCAACACAAGCATTCGCAACTTGGAATATGTTAATAAGA
TACCTTAAGTCATTTTATTTAACCACATAAGTTGTGGTTATTCAGCTAAA
GTTGTCTATGAAATAGAAACGAATTTcgtaaaaacaaatacatataattt
tataatgGCAAATGGTGGTGTAATTCACTGGTTTCGTAAAGGGTTACGGC
TGCATGACAACCCTGCTTTGATCAATGCATTAGAATCCAAACTTCGTTTG
TACCCAATCTTTATTTTGGATCCTTGGTTTGTCAAAAATGCATGCGTTGG
TGTTAATCGGTGGAGATTTTTACAGCAAACATTGACAGACTTAGATCAAC
AACTGAGGAGGTTAGGTTCTAGGCTACTTGTGGTACGAGGAAAACCAGAG
GTGAAATTCCCAGAGCTGATTAAAAATTGGAATGTACAAAAATTAACTTA
TGAAATTGATACAGAACCATATTCTAAGATACGAGACAAGAAAGTTGATG
AATTGGCTGCTGAATATAAAGTAGAGGTATCTTCCCATGTGTCCCACACC
CTTTATGATGTCAATAAAATTATTGGTAAGAATAAAGGGCAGCCACCTTT
AACTTACCAGAAACACGAATTGTTGATTGCATCTCTGGGGCCACCACCAA
AGTCTTTGGATGCACCAAAAAATATACCAAGTGATTACCAGATGCCTGAA
GACGTGTTGAAAAATGGAGATTTTGACATCCCAACACTAGAGGAGTTGGG
TGTTTGTGAATCAGATTTGAACTCTTGTTTATACAAAGGTGGAGAAACAG
AAGGTTTGAAACGCTTGAATTCCTATATTTgtgaagaaaagaagaattgg
GTTGCTGATTTTGAGAAACCTAAAACATCACCGAACAGTTTGGAACCAAG
TACAACTGTCTTAAGCCCTTACCTGAAATTTGGATGTGTTTCTCCAAGAT
TGATGTACGAGCGACTTCAAATGGTGTATAAATTGAAACCAAAACACTCT
AAGCCACCTGTTTCGTTGTATGGTCAATTGTTATGGAGAGAATTTTTTTA
CACTTGTGGATCTGCTGTCCAAAACTTTGATCAAATGAAAGGGAATCCTA
TTTGTCGACAAATTGATTGGGACACAAACACAGAATATCTTGCAGCATGG
CGTGAAGGGCGAACTGGTTATCCATACATCGATGCCATTATGATTCAACT
ACGACAAGAAGGTTGGATACATCATTTAGCGAGACATTCAGTGGCTTGTT
TCTTAACAAGAGGCGATTTGTATATTTCATGGGAAGAAGGCATGAAAGTG
TTTGAGGAGTATCTATTGGACGCTGACTGGTCTTTGAATGCTGCTAACTG
GATGTGGTTATCCGCCTC
Run BLAST on NCBI

protein sequence of TCONS_00062708-protein

>TCONS_00062708-protein ID=TCONS_00062708-protein|Name=TCONS_00062708-protein|organism=Clytia hemisphaerica|type=polypeptide|length=404bp
MANGGVIHWFRKGLRLHDNPALINALESKLRLYPIFILDPWFVKNACVGV
NRWRFLQQTLTDLDQQLRRLGSRLLVVRGKPEVKFPELIKNWNVQKLTYE
IDTEPYSKIRDKKVDELAAEYKVEVSSHVSHTLYDVNKIIGKNKGQPPLT
YQKHELLIASLGPPPKSLDAPKNIPSDYQMPEDVLKNGDFDIPTLEELGV
CESDLNSCLYKGGETEGLKRLNSYICEEKKNWVADFEKPKTSPNSLEPST
TVLSPYLKFGCVSPRLMYERLQMVYKLKPKHSKPPVSLYGQLLWREFFYT
CGSAVQNFDQMKGNPICRQIDWDTNTEYLAAWREGRTGYPYIDAIMIQLR
QEGWIHHLARHSVACFLTRGDLYISWEEGMKVFEEYLLDADWSLNAANWM
WLSA
Run BLAST on NCBI

transcript from alignment at scaffold_371:592702..594752+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062708 ID=TCONS_00062708|Name=TCONS_00062708|organism=Clytia hemisphaerica|type=transcript|length=2051bp|location=Sequence derived from alignment at scaffold_371:592702..594752+ (Clytia hemisphaerica)
TATCGATTGACGTCATAATGAGCTTTGTATAAAGCCCAAATTGCAgagaa
cgataaactcggtatacattCACACGTCATTCATCTGGATAAGGCTATCA
CTAtgtctcactaacattctgcAGAATGATAGTGTGAAGGTTTTGATTAC
AGACTAGGAACGCAACACAAGCATTCGCAACTTGGAATATGTTAATAAGA
TACCTTAAGTCATTTTATTTAACCACATAAGTTGTGGTTATTCAGCTAAA
GTTGTCTATGAAATAGAAACGAATTTcgtaaaaacaaatacatataattt
tataatgGCAAATGGTGGTGTAATTCACTGGTTTCGTAAAGGGTTACGGC
TGCATGACAACCCTGCTTTGATCAATGCATTAGAATCCAAACTTCGTTTG
TACCCAATCTTTATTTTGGATCCTTGGTTTGTCAAAAATGCATGCGTTGG
TGTTAATCGGTGGAGATTTTTACAGCAAACATTGACAGACTTAGATCAAC
AACTGAGGAGGTTAGGTTCTAGGCTACTTGTGGTACGAGGAAAACCAGAG
GTGAAATTCCCAGAGCTGATTAAAAATTGGAATGTACAAAAATTAACTTA
TGAAATTGATACAGAACCATATTCTAAGATACGAGACAAGAAAGTTGATG
AATTGGCTGCTGAATATAAAGTAGAGGTATCTTCCCATGTGTCCCACACC
CTTTATGATGTCAATAAAATTATTGGTAAGAATAAAGGGCAGCCACCTTT
AACTTACCAGAAACACGAATTGTTGATTGCATCTCTGGGGCCACCACCAA
AGTCTTTGGATGCACCAAAAAATATACCAAGTGATTACCAGATGCCTGAA
GACGTGTTGAAAAATGGAGATTTTGACATCCCAACACTAGAGGAGTTGGG
TGTTTGTGAATCAGATTTGAACTCTTGTTTATACAAAGGTGGAGAAACAG
AAGGTTTGAAACGCTTGAATTCCTATATTTgtgaagaaaagaagaattgg
GTTGCTGATTTTGAGAAACCTAAAACATCACCGAACAGTTTGGAACCAAG
TACAACTGTCTTAAGCCCTTACCTGAAATTTGGATGTGTTTCTCCAAGAT
TGATGTACGAGCGACTTCAAATGGTGTATAAATTGAAACCAAAACACTCT
AAGCCACCTGTTTCGTTGTATGGTCAATTGTTATGGAGAGAATTTTTTTA
CACTTGTGGATCTGCTGTCCAAAACTTTGATCAAATGAAAGGTATTGTTt
gctaaaatgtcaattttttggTTATACCCAAGAATGTTTTTCTTTAGGCC
ATATGAAGAAAGAAACAATATCAGTCCCACCTTACTGATTTATCCTCTGC
TagctttatttatttatttagttacATTGAAAAGTGTTTTCCTTTCAATT
TTCCGTCTCAATAGATATATTATTTTTAGAGGTAACTTTAGGAAGAACTT
GATATTGTTCACAATTCCCTCTTAAGTTTTAGCCAAAATCGAGACTTGTG
CTCTTATATAAAAAGTTCTAATTGAAAGACTTTTCTTTAGGGAATCCTAT
TTGTCGACAAATTGATTGGGACACAAACACAGAATATCTTGCAGCATGGC
GTGAAGGGCGAACTGGTTATCCATACATCGATGCCATTATGATTCAACTA
CGACAAGAAGGTTGGATACATCATTTAGCGAGACATTCAGTGGCTTGTTT
CTTAACAAGAGGCGATTTGTATATTTCATGGGAAGAAGGTATTGGTGGTT
TTATTCTGTTACTTTTATTGATTTCAGTATgtctaaaacaaaaaatgaca
aacttttattattcgtttattCAATTATAGATGAAAACTATCCTGAAACC
TTTTGATAGAGATGCGATTTGTCAACTCCTCTATTTTCAGTCGTGGCTGA
AACAATGGTCCAAAAAATTTATACTTACAATTTAAAAGATATTGAACAAA
TTTGAAATAATCTTTCTTTTAGGCATGAAAGTGTTTGAGGAGTATCTATT
GGACGCTGACTGGTCTTTGAATGCTGCTAACTGGATGTGGTTATCCGCCT
C

Coding sequence (CDS) from alignment at scaffold_371:592702..594752+

>TCONS_00062708 ID=TCONS_00062708|Name=TCONS_00062708|organism=Clytia hemisphaerica|type=CDS|length=3636bp|location=Sequence derived from alignment at scaffold_371:592702..594752+ (Clytia hemisphaerica)
atgGCAAATGGTGGTGTAATTCACTGGTTTCGTAAAGGGTTACGGCTGCA
TGACAACCCTGCTTTGATCAATGCATTAGAATCCAAACTTCGTTTGTACC
CAATCTTTATTTTGGATCCTTGGTTTGTCAAAAATGCATGCGTTGGTGTT
AATCGGTGGAGATTTTTACAGCAAACATTGACAGACTTAGATCAACAACT
GAGGAGGTTAGGTTCTAGGCTACTTGTGGTACGAGGAAAACCAGAGGTGA
AATTCCCAGAGCTGATTAAAAATTGGAATGTACAAAAATTAACTTATGAA
ATTGATACAGAACCATATTCTAAGATACGAGACAAGAAAGTTGATGAATT
GGCTGCTGAATATAAAGTAGAGGTATCTTCCCATGTGTCCCACACCCTTT
ATGATGTCAATAAAATTATTGGTAAGAATAAAGGGCAGCCACCTTTAACT
TACCAGAAACACGAATTGTTGATTGCATCTCTGGGGCCACCACCAAAGTC
TTTGGATGCACCAAAAAATATACCAAGTGATTACCAGATGCCTGAAGACG
TGTTGAAAAATGGAGATTTTGACATCCCAACACTAGAGGAGTTGGGTGTT
TGTGAATCAGATTTGAACTCTTGTTTATACAAAGGTGGAGAAACAGAAGG
TTTGAAACGCTTGAATTCCTATATTTgtgaagaaaagaagaattggGTTG
CTGATTTTGAGAAACCTAAAACATCACCGAACAGTTTGGAACCAAGTACA
ACTGTCTTAAGCCCTTACCTGAAATTTGGATGTGTTTCTCCAAGATTGAT
GTACGAGCGACTTCAAATGGTGTATAAATTGAAACCAAAACACTCTAAGC
CACCTGTTTCGTTGTATGGTCAATTGTTATGGAGAGAATTTTTTTACACT
TGTGGATCTGCTGTCCAAAACTTTGATCAAATGAAAGGGAATCCTATTTG
TCGACAAATTGATTGGGACACAAACACAGAATATCTTGCAGCATGGCGTG
AAGGGCGAACTGGTTATCCATACATCGATGCCATTATGATTCAACTACGA
CAAGAAGGTTGGATACATCATTTAGCGAGACATTCAGTGGCTTGTTTCTT
AACAAGAGGCGATTTGTATATTTCATGGGAAGAAGGCATGAAAGTGTTTG
AGGAGTATCTATTGGACGCTGACTGGTCTTTGAATGCTGCTAACTGGATG
TGGTTATCCGCCatgGCAAATGGTGGTGTAATTCACTGGTTTCGTAAAGG
GTTACGGCTGCATGACAACCCTGCTTTGATCAATGCATTAGAATCCAAAC
TTCGTTTGTACCCAATCTTTATTTTGGATCCTTGGTTTGTCAAAAATGCA
TGCGTTGGTGTTAATCGGTGGAGATTTTTACAGCAAACATTGACAGACTT
AGATCAACAACTGAGGAGGTTAGGTTCTAGGCTACTTGTGGTACGAGGAA
AACCAGAGGTGAAATTCCCAGAGCTGATTAAAAATTGGAATGTACAAAAA
TTAACTTATGAAATTGATACAGAACCATATTCTAAGATACGAGACAAGAA
AGTTGATGAATTGGCTGCTGAATATAAAGTAGAGGTATCTTCCCATGTGT
CCCACACCCTTTATGATGTCAATAAAATTATTGGTAAGAATAAAGGGCAG
CCACCTTTAACTTACCAGAAACACGAATTGTTGATTGCATCTCTGGGGCC
ACCACCAAAGTCTTTGGATGCACCAAAAAATATACCAAGTGATTACCAGA
TGCCTGAAGACGTGTTGAAAAATGGAGATTTTGACATCCCAACACTAGAG
GAGTTGGGTGTTTGTGAATCAGATTTGAACTCTTGTTTATACAAAGGTGG
AGAAACAGAAGGTTTGAAACGCTTGAATTCCTATATTTgtgaagaaaaga
agaattggGTTGCTGATTTTGAGAAACCTAAAACATCACCGAACAGTTTG
GAACCAAGTACAACTGTCTTAAGCCCTTACCTGAAATTTGGATGTGTTTC
TCCAAGATTGATGTACGAGCGACTTCAAATGGTGTATAAATTGAAACCAA
AACACTCTAAGCCACCTGTTTCGTTGTATGGTCAATTGTTATGGAGAGAA
TTTTTTTACACTTGTGGATCTGCTGTCCAAAACTTTGATCAAATGAAAGG
GAATCCTATTTGTCGACAAATTGATTGGGACACAAACACAGAATATCTTG
CAGCATGGCGTGAAGGGCGAACTGGTTATCCATACATCGATGCCATTATG
ATTCAACTACGACAAGAAGGTTGGATACATCATTTAGCGAGACATTCAGT
GGCTTGTTTCTTAACAAGAGGCGATTTGTATATTTCATGGGAAGAAGGCA
TGAAAGTGTTTGAGGAGTATCTATTGGACGCTGACTGGTCTTTGAATGCT
GCTAACTGGATGTGGTTATCCGCCatgGCAAATGGTGGTGTAATTCACTG
GTTTCGTAAAGGGTTACGGCTGCATGACAACCCTGCTTTGATCAATGCAT
TAGAATCCAAACTTCGTTTGTACCCAATCTTTATTTTGGATCCTTGGTTT
GTCAAAAATGCATGCGTTGGTGTTAATCGGTGGAGATTTTTACAGCAAAC
ATTGACAGACTTAGATCAACAACTGAGGAGGTTAGGTTCTAGGCTACTTG
TGGTACGAGGAAAACCAGAGGTGAAATTCCCAGAGCTGATTAAAAATTGG
AATGTACAAAAATTAACTTATGAAATTGATACAGAACCATATTCTAAGAT
ACGAGACAAGAAAGTTGATGAATTGGCTGCTGAATATAAAGTAGAGGTAT
CTTCCCATGTGTCCCACACCCTTTATGATGTCAATAAAATTATTGGTAAG
AATAAAGGGCAGCCACCTTTAACTTACCAGAAACACGAATTGTTGATTGC
ATCTCTGGGGCCACCACCAAAGTCTTTGGATGCACCAAAAAATATACCAA
GTGATTACCAGATGCCTGAAGACGTGTTGAAAAATGGAGATTTTGACATC
CCAACACTAGAGGAGTTGGGTGTTTGTGAATCAGATTTGAACTCTTGTTT
ATACAAAGGTGGAGAAACAGAAGGTTTGAAACGCTTGAATTCCTATATTT
gtgaagaaaagaagaattggGTTGCTGATTTTGAGAAACCTAAAACATCA
CCGAACAGTTTGGAACCAAGTACAACTGTCTTAAGCCCTTACCTGAAATT
TGGATGTGTTTCTCCAAGATTGATGTACGAGCGACTTCAAATGGTGTATA
AATTGAAACCAAAACACTCTAAGCCACCTGTTTCGTTGTATGGTCAATTG
TTATGGAGAGAATTTTTTTACACTTGTGGATCTGCTGTCCAAAACTTTGA
TCAAATGAAAGGGAATCCTATTTGTCGACAAATTGATTGGGACACAAACA
CAGAATATCTTGCAGCATGGCGTGAAGGGCGAACTGGTTATCCATACATC
GATGCCATTATGATTCAACTACGACAAGAAGGTTGGATACATCATTTAGC
GAGACATTCAGTGGCTTGTTTCTTAACAAGAGGCGATTTGTATATTTCAT
GGGAAGAAGGCATGAAAGTGTTTGAGGAGTATCTATTGGACGCTGACTGG
TCTTTGAATGCTGCTAACTGGATGTGGTTATCCGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039292XLOC_039292Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062708-proteinTCONS_00062708-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062708-exon-scaffold_371-1491911889:592702..593942TCONS_00062708-exon-scaffold_371-1491911889:592702..593942Clytia hemisphaericaexon
TCONS_00062708-exon-scaffold_371-1510915933:592702..593942TCONS_00062708-exon-scaffold_371-1510915933:592702..593942Clytia hemisphaericaexon
TCONS_00062708-exon-scaffold_371-1575043694:592702..593942TCONS_00062708-exon-scaffold_371-1575043694:592702..593942Clytia hemisphaericaexon
TCONS_00062708-exon-scaffold_371-1491911889:594242..594439TCONS_00062708-exon-scaffold_371-1491911889:594242..594439Clytia hemisphaericaexon
TCONS_00062708-exon-scaffold_371-1510915933:594242..594439TCONS_00062708-exon-scaffold_371-1510915933:594242..594439Clytia hemisphaericaexon
TCONS_00062708-exon-scaffold_371-1575043694:594242..594439TCONS_00062708-exon-scaffold_371-1575043694:594242..594439Clytia hemisphaericaexon
TCONS_00062708-exon-scaffold_371-1491911889:594674..594752TCONS_00062708-exon-scaffold_371-1491911889:594674..594752Clytia hemisphaericaexon
TCONS_00062708-exon-scaffold_371-1510915933:594674..594752TCONS_00062708-exon-scaffold_371-1510915933:594674..594752Clytia hemisphaericaexon
TCONS_00062708-exon-scaffold_371-1575043694:594674..594752TCONS_00062708-exon-scaffold_371-1575043694:594674..594752Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_371supercontigscaffold_371:592702..594752 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.01404	4.30803	1.4423	0.900683	20.3583	17.5315	11.1853	11.2871	4.77338	6.50669	5.13482	3.84474	4.07372	3.63158	3.90905	3.8812	7.36528	8.00796	3.3997	3.19576	5.13611	4.90818	9.85099	9.7753	9.02076	10.6478	3.23322	2.34005	6.13676	6.58952
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006050DNA_photolyase_N
IPR014729Rossmann-like_a/b/a_fold
IPR005101Cryptochr/Photolyase_FAD-bd
Blast
[Close]
BLAST of TCONS_00062708 vs. Swiss-Prot (Human)
Match: CRY1 (Cryptochrome-1 OS=Homo sapiens GN=CRY1 PE=1 SV=1)

HSP 1 Score: 427.557 bits (1098), Expect = 6.208e-143
Identity = 227/402 (56.47%), Postives = 287/402 (71.39%), Query Frame = 2 
Query:  320 VIHWFRKGLRLHDNPALINALESKLRLYPIFILDPWFVKNACVGVNRWRFXXXXXXXXXXXXXXXXXXXXXXXXKPEVKFPELIKNWNVQKLTYEIDTEPYSKIRDKKVDELAAEYKVEVSSHVSHTLYDVNKIIGKNKGQPPLTYQKHELLIASLGP---PPKSLDAPKNIPSDYQMPEDVLKNGDFDIPTLEELGVCESDLNSCLYKGGETEGLKRLNSYICEEKKNWVADFEKPKTSPNSLEPSTTVLSPYLKFGCVSPRLMYERLQMVYKLKPKHSKPPVSLYGQLLWREFFYTCGSAVQNFDQMKGNPICRQIDWDTNTEYLAAWREGRTGYPYIDAIMIQLRQEGWIHHLARHSVACFLTRGDLYISWEEGMKVFEEYLLDADWSLNAANWMWLSA 1516
             +HWFRKGLRLHDNPAL   ++    +  ++ILDPWF  ++ VG+NRWRFL Q L DLD  LR+L SRL V+RG+P   FP L K WN+ KL+ E D+EP+ K RD  + +LA E  VEV   +SHTLYD++KII  N GQPPLTY++ + LI+ + P   P +++ +   +      P     +  + +P+LEELG     L+S ++ GGETE L RL  ++  E+K WVA+FE+P+ + NSL  S T LSPYL+FGC+S RL Y +L  +YK   K+S PP+SLYGQLLWREFFYT  +    FD+M+GNPIC QI WD N E LA W EGRTG+P+IDAIM QLRQEGWIHHLARH+VACFLTRGDL+ISWEEGMKVFEE LLDADWS+NA +WMWLS 
Sbjct:    5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITS--EVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHL--ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSC 402
The following BLAST results are available for this feature:
BLAST of TCONS_00062708 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CRY16.208e-14356.47Cryptochrome-1 OS=Homo sapiens GN=CRY1 PE=1 SV=1[more]
back to top