TCONS_00062709-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00062709-protein
Unique NameTCONS_00062709-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length257

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00062709-protein ID=TCONS_00062709-protein|Name=TCONS_00062709-protein|organism=Clytia hemisphaerica|type=polypeptide|length=257bp
MSLLVTAGEDVRLWNVPDLSLQKVRNGTNANVLHCICSPNGQYVAYTYEE
VGIRISSMSDDDLPVIEIPTPIQQSSVAFNGHSRYLVSGGLDCVINIWDI
KSRTVKRTYKNHFNPVTYCQFNYNDNIIASSSDHGDIILTNVSSGECSDP
LTGNDDSQAVRCLGYSHFSRSLLASVSDSGAVCLWDTKEQKMLKKFTDHK
APGTCLSFSPLNDMLLCSSGLDKRIIFYDVIGKKTVKTINTEGPITSCDF
FSDGCTX
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_039293XLOC_039293Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00062709TCONS_00062709Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR0110426-blade_b-propeller_TolB-like
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 102..141
e-value: 0.073
score: 22.2
coord: 144..186
e-value: 0.0049
score: 26.1
coord: 61..99
e-value: 0.13
score: 21.4
coord: 189..229
e-value: 2.4E-4
score: 30.5
IPR001680WD40 repeatPFAMPF00400WD40coord: 106..134
e-value: 0.14
score: 13.0
coord: 192..229
e-value: 0.078
score: 13.8
coord: 75..99
e-value: 0.0068
score: 17.1
coord: 145..186
e-value: 0.14
score: 13.0
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 76..108
score: 10.843
NoneNo IPR availableGENE3D1.10.10.670coord: 181..251
e-value: 1.6E-14
score: 53.1
NoneNo IPR availableGENE3D2.40.50.140coord: 145..180
e-value: 4.7E-6
score: 25.6
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 90..144
e-value: 3.8E-16
score: 57.9
IPR011042Six-bladed beta-propeller, TolB-likeGENE3D2.120.10.30coord: 1..89
e-value: 1.3E-10
score: 40.3
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 86..100
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 1..238
score: 22.122
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 6..254

Blast
[Close]
BLAST of TCONS_00062709-protein vs. Swiss-Prot (Human)
Match: NEDD1 (Protein NEDD1 OS=Homo sapiens GN=NEDD1 PE=1 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 7.956e-53
Identity = 105/257 (40.86%), Postives = 153/257 (59.53%), Query Frame = 0 
Query:    4 LVTAGEDVRLWNVPDLSL-QKVRNGTNANVLHCIC--SPNGQYVAYTYEEVGIRISSMSDDDLPVIEIPTPIQQSSVAFNGHSRYLVSGGLDCVINIWDIKSRTVKRTYKNHFNPVTYCQFNYNDNIIASSSDHGDIILTNVSSGECSDPLTGNDDSQAVRCLGYSHFSRSLLASVSDSGAVCLWDTKEQKMLKKFTD-HKAPGTCLSFSPLNDMLLCSSGLDKRIIFYDVIGKKTVKTINTEGPITSCDFFSDGCT 256
              ++G+D+++W+   ++L  K    T+ + +  IC  S N   V  +     I +SS     +P++E+    +Q+ V  N  S YLVSGGL+  +NIWD+KS+ V R+ K+H + VT   +N+ND  IAS S  G+IIL +V++   S P  G+  +Q+VR L YS F +SLL SVSD+G V LWD   Q     F   HKAP + + FSP+N++L  + GLDKRII YD   KK VKT+  + P+T+ DF  DG T
Sbjct:    7 FASSGDDIKIWDASSMTLVDKFNPHTSPHGISSICWSSNNNFLVTASSSGDKIVVSSCKCKPVPLLELAEGQKQTCVNLNSTSMYLVSGGLNNTVNIWDLKSKRVHRSLKDHKDQVTCVTYNWNDCYIASGSLSGEIILHSVTTNLSSTPF-GHGSNQSVRHLKYSLFKKSLLGSVSDNGIVTLWDVNSQSPYHNFDSVHKAPASGICFSPVNELLFVTIGLDKRIILYDTSSKKLVKTLVADTPLTAVDFMPDGAT 262
The following BLAST results are available for this feature:
BLAST of TCONS_00062709-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NEDD17.956e-5340.86Protein NEDD1 OS=Homo sapiens GN=NEDD1 PE=1 SV=1[more]
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