TCONS_00062721-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00062721-protein
Unique Name	TCONS_00062721-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1296

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00062721-protein ID=TCONS_00062721-protein|Name=TCONS_00062721-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1296bp
MLFAYQVVMKIHMNLKGRAYHQHHRQPXNRSPVIVKPTTKPKQATKPSDV
ICLSSSDEDSHEPEGESIPSTSSATRADRKEIFVLSSDSDEEEMEDDGAL
ANHHTDLGLHTRDTFNKPEADGRVWINLNKKEFEEKVFLSKHISQILKPH
QIGGLRFMFDNLIESVNEFRPNRGNGCILAHAMGLGKTIQTITFINLFLK
CTPADRVLCVVPVNTIQNWSHEFNKWIPKRPQSTKVETDILQNNVAKGTS
PQRQQKSKGSSKNKTDLTVQPAQNENTNMEVHESMAILTGKSISPKMQNN
QLAQFNLTSVDMQGPNGAVSSPQSVLGEFSSNNTSGCANNLNSIVTTGKG
SQQTIDSDQIVDQESISQQSINSAVNSLPKETEHQSLSTDTNDLFSLLGC
PSTENALAQNSEQSGFKTNLSNGQPKDTFTDFSTIKTLLDDMVNFVGENE
KVAKQYDDSGMVVDPLNTGEDEDVDRYRDFDVYLIDAQKTWPDRINTIDS
WVENGGVLLIGYEMYRMLASGIKFPKLKGRKGKILLEDKRDLKKAMKEAI
CDPGPDLVVCDEGHRIRNYQSGISQSLKSINTSKRLVLTGYPLQNNLIEY
WCMVDFVRPDYLGTRQEFANMFERPILNGQCVDSTTADKRLMRERAHVLF
SLLQGFVQRRGHKVFKSILPDKYEHVIMVRMSPAQKALYQRLVELTREAY
SDSLNPIKTFHLCCKIWNHPDILYKAMQAASNGTAMDIFNDEDDIDNDTT
TASSSSSTSGKPPSKRKKMHHSNSPSPAQLMMQAMGGQGQQPQLEIGFNP
FGGPDPRQILMDITQWAPEVFQNCGYKPGDVNNSGKFLILSQLIREAVAE
DDKMLIFSQSLFTLNTIEEMLKKSAVVESEPSGSTWKKGEHYFRIDGSTT
SYERERYINAFNEETNRKAKLFLLSTRAGCLGINLVGANRVVVFDVSWNP
CHDAQAVCRVYRYGQVKPCYIYRLVASNTMEKKIYYRQISKQGISNRVVD
EMNQTENFSKNEIQSLIAEDWVEEPRPDFSHFVTSHCDRILSSIVLECSD
WITQVPFKHESLLINDEETDKLTGSEKRAAKRAYEQQKQISRGSYGGGGF
GYRPLQPNFPLNPPVAPVRPFSWRPPISITSSLPSMASNSGMRISFPVMI
GNQTITASRTVHSSNNTTSSSMHRVSSFSPYQPRSLPQTTSITSSTADPL
LNSMLTSLRGSLSASHLIRQRLNQNTADNNDDGDNDDDNDITTAAQNAVL
SNYQENVAKILMNASSASLNSSPMMMSSSSNDVIVLDDSDDEDDVT

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_039297	XLOC_039297	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00062721	TCONS_00062721	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR014001	Helicase_ATP-bd
IPR001650	Helicase_C
IPR000330	SNF2_N
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0005524	ATP binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005524	ATP binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014001	Helicase superfamily 1/2, ATP-binding domain	SMART	SM00487	ultradead3	coord: 143..618 e-value: 4.4E-19 score: 79.4
IPR014001	Helicase superfamily 1/2, ATP-binding domain	PROSITE	PS51192	HELICASE_ATP_BIND_1	coord: 168..269 score: 7.894
IPR014001	Helicase superfamily 1/2, ATP-binding domain	PROSITE	PS51192	HELICASE_ATP_BIND_1	coord: 534..610 score: 8.742
IPR001650	Helicase, C-terminal	SMART	SM00490	helicmild6	coord: 865..964 e-value: 3.8E-16 score: 69.7
IPR001650	Helicase, C-terminal	PFAM	PF00271	Helicase_C	coord: 836..964 e-value: 6.4E-14 score: 52.2
IPR001650	Helicase, C-terminal	PROSITE	PS51194	HELICASE_CTER	coord: 839..1010 score: 13.975
None	No IPR available	GENE3D	3.40.50.10810		coord: 116..659 e-value: 1.1E-43 score: 148.5
None	No IPR available	GENE3D	3.40.50.300		coord: 828..1002 e-value: 2.6E-30 score: 104.4
None	No IPR available	CDD	cd00079	HELICc	coord: 830..972 e-value: 6.48587E-17 score: 78.4336
None	No IPR available	CDD	cd00046	DEXDc	coord: 175..236 e-value: 9.97234E-8 score: 50.7988
IPR000330	SNF2-related, N-terminal domain	PFAM	PF00176	SNF2_N	coord: 163..232 e-value: 2.8E-13 score: 49.2 coord: 481..708 e-value: 6.9E-34 score: 117.0
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 123..237
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 477..518 coord: 547..660
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 664..726 coord: 827..1020

Blast

[Close]

BLAST of TCONS_00062721-protein vs. Swiss-Prot (Human)
Match: ARIP4 (Helicase ARIP4 OS=Homo sapiens GN=RAD54L2 PE=1 SV=4)

HSP 1 Score: 593.578 bits (1529), Expect = 0.000e+0
Identity = 346/749 (46.19%), Postives = 467/749 (62.35%), Query Frame = 0

Query:  478 RDFDVYLI-DAQKTWPDRINTIDSWVENGGVLLIGYEMYRMLASGIKFP-----KLKGRKGKILL----EDKR-DLKKAMKEAICDPGPDLVVCDEGHRIRNYQSGISQSLKSINTSKRLVLTGYPLQNNLIEYWCMVDFVRPDYLGTRQEFANMFERPILNGQCVDSTTADKRLMRERAHVLFSLLQGFVQRRGHKVFKSILPDKYEHVIMVRMSPAQKALYQRLVELTREAYSD---SLNPIKTFHLCCKIWNHPDILYKAMQAASNGTAMDIFNDEDDIDNDTTTASSSSSTSGKPPSKRKKMHHSNSPSPAQLMMQAMGGQGQQPQLE-IGFNPFGGPDPRQILMDITQWAPEVFQNCGYKPGDVNNSGKFLILSQLIREAVAEDDKMLIFSQSLFTLNTIEEMLKKSAV---VESEPSGS-TWKKGEHYFRIDGSTTSYERERYINAFNEETNRKAKLFLLSTRAGCLGINLVGANRVVVFDVSWNPCHDAQAVCRVYRYGQVKPCYIYRLVASNTMEKKIYYRQISKQGISNRVVDEMNQTENFSKNEIQSLIAEDWVE-EPRPDFSHFVTSHCDRILSSIVLECSDWITQVPFKHESLLINDEETDKLTGSEKRAAKRAYEQQKQIS----RGSYGG------------GGFGYRPLQPNFPLN-PPVAPVRPFSWRPPISITSSLP-----SMASNSGMRISFPV-------MIGNQTITASRTVHSSNNTTSSSMHRVSS 1177
            R F V+++ D  KT   R   +  WV  GGVLL+GYEMYR+L     F      K K R   +++    ED++ + ++  ++A+C PGPD+V+CDEGHRI+N Q+  SQ+LK+I + +R+VLTGYPLQNNLIEYWCMVDFVRPD+LGTRQEF+NMFERPILNGQC+DST  D RLMR R+HVL SLL+GFVQRRGH V K  LP K E+VI+VR+S  Q+ LY + ++  R+  S     LNP+K F +CCKIWNHPD+LY+A+Q  S         +E D+D +      S+ TS + P +  K    +S      +  +MG       L+ +GFNPF     R   +   +WA ++  N  Y+ G + NS K ++L  LI E+V   DK+L+FSQSL TL  IEE L K  V     +E  G+  W +   YFR+DGST ++ERER IN FN+ +N    LFLLSTRAGCLG+NL+GANRVVVFD SWNPCHDAQAVCRVYRYGQ KPCYIYRLVA  T+EKKIY RQISKQG+S+RVVD++N   NF++ E+++L+   +VE EP P  S  V    + +L    L+    IT+ PF+HESLL+N ++  KLT +EK+AAK++YE+ K+ S    R SY                F  R  QP    +  PVA VRP    P   +   +P     S AS++   ++FP+       ++  + +T +  V    N+++    R+++
Sbjct:  369 RFFKVHILNDEHKTMASRAKVMADWVSEGGVLLMGYEMYRLLTLKKSFATGRPKKTKKRSHPVIIDLDEEDRQQEFRREFEKALCRPGPDVVICDEGHRIKNCQASTSQALKNIRSRRRVVLTGYPLQNNLIEYWCMVDFVRPDFLGTRQEFSNMFERPILNGQCIDSTPQDVRLMRYRSHVLHSLLEGFVQRRGHTVLKIHLPAKEENVILVRLSKIQRDLYTQFMDRFRDCGSSGWLGLNPLKAFCVCCKIWNHPDVLYEALQKES-------LANEQDLDVEEL---GSAGTSARCPPQGTKGKGEDS-----TLASSMGEATNSKFLQGVGFNPF---QERGNNIVTYEWAKDLLTN--YQTGVLENSPKMVLLFHLIEESVKLGDKILVFSQSLSTLALIEEFLGKREVPCPPGTEGQGAQKWVRNISYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQAVCRVYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGMSDRVVDDLNPMLNFTRKEVENLL--HFVEKEPAPQVSLNVKGIKESVLQLACLKYPHLITKEPFEHESLLLNRKD-HKLTKAEKKAAKKSYEEDKRTSVPYTRPSYAQYYPASDQSLTSIPAFSQRNWQPTLKGDEKPVASVRPVQSTPIPMMPRHVPLGGSVSSASSTNPSMNFPINYLQRAGVLVQKVVTTTDIVIPGLNSSTDVQARINA 1094

HSP 2 Score: 157.918 bits (398), Expect = 1.006e-38
Identity = 80/185 (43.24%), Postives = 111/185 (60.00%), Query Frame = 0

Query:   49 DVICLSSSDEDSHEPEGESIPSTSSATRADRKEIFVLSSDSDE-----EEMEDDGALANHHTDLGLHTRDTFNKPEADGRVWINLNKKEFEEKVFLSKHISQILKPHQIGGLRFMFDNLIESVNEFRPNRGNGCILAHAMGLGKTIQTITFINLFLKCTPADRVLCVVPVNTIQNWSHEFNKWIP 228
            +VICL SS             S S   ++ R E+  LSS  ++     +  E            G H  D  N+ +A GRV +NLN    EE VFL+  +++ +KPHQIGG+RF++DNL+ES+  F+ + G GCILAH+MGLGKT+Q I+FI++  + TPA  VL +VPVNT+QNW  EFN W+P
Sbjct:  181 EVICLDSS-------------SGSEDEKSSRDEVIELSSGEEDTLHIVDSSESVSEDDEEEEKGGTHVNDVLNQRDALGRVLVNLNHPPEEENVFLAPQLARAVKPHQIGGIRFLYDNLVESLERFKTSSGFGCILAHSMGLGKTLQVISFIDVLFRHTPAKTVLAIVPVNTLQNWLAEFNMWLP 352

The following BLAST results are available for this feature:

BLAST of TCONS_00062721-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00062721-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ARIP4	1.006e-38	46.19	Helicase ARIP4 OS=Homo sapiens GN=RAD54L2 PE=1 SV=...	[more]

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TCONS_00062721-protein (polypeptide) - C. hemisphaerica