TCONS_00062727-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00062727-protein
Unique NameTCONS_00062727-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length635

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00062727-protein ID=TCONS_00062727-protein|Name=TCONS_00062727-protein|organism=Clytia hemisphaerica|type=polypeptide|length=635bp
MSSVQEKTKIKEIFSTLAESDASNKQEKEEKDPNIESNVSCNPQSKDLFL
ERVKTFTTTNWAAKPNELSPLKCAQYGWCNEELDQLRCVTCSATIFAGMP
DDWDSSAYSDICNEIKDKLKIGHQKLCPWPQNPCPPSFLSLPSRSAQQWK
MEIRSAFCGLLELKGNLPELNEDTVASMKSLDNSCIEKLLTNVFRHSCDT
DDEVLQAKVACILAVTGWNASQPIVEDPSITCSLCGKESGLWHYKSLSSR
RNAKQQKLHFESATSQQSLSEDFMSSRVSVKSENSTHSGSVTHELSKLAT
SSDSLAHSDLLKPAGSQESLVNLRVSDSKHMSIDHDHDDADSMGGGHYHS
SHPPHSIMKSSIFSEPARIPLATPQELMKELLLSTAPGGRSHSIYSDSIF
SEVGSECFEKRLEDTTEKDLELEKAITENPPSSHPNHVQQQWMKELLFMT
ADNTNIEATESVMSEIGSISFDRRLDSHSIAHTPRAMTPVHQTEDEDGEP
VRTKRMRFQEPFEESFNMLSEHRHWCPWTNILLASPTHDDVHAPAQSDNV
SSTTSGFERTPRNIFGSRTQALPGWKIVLMTIFPALGRDVSSPVSPPPPN
EAWKSVRTLLGDCVSPYKPAATSSTTSSAPSSLNT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_039300XLOC_039300Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00062727TCONS_00062727Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013909NIPA/Rsm1
IPR012935Znf_C3HC-like
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005634 nucleus
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013909Nuclear-interacting partner of ALK/Rsm1-likePFAMPF08600Rsm1coord: 210..258
e-value: 3.8E-5
score: 23.6
IPR012935Zinc finger, C3HC-likePFAMPF07967zf-C3HCcoord: 43..171
e-value: 3.3E-28
score: 98.2
NoneNo IPR availableGENE3D1.10.1170.10coord: 6..129
e-value: 3.3E-4
score: 20.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 274..295
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 18..37
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 540..562

Blast
[Close]
BLAST of TCONS_00062727-protein vs. Swiss-Prot (Human)
Match: NIPA (Nuclear-interacting partner of ALK OS=Homo sapiens GN=ZC3HC1 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.167e-29
Identity = 81/245 (33.06%), Postives = 115/245 (46.94%), Query Frame = 0 
Query:   16 TLAESDASNKQEKEEKDPNIESNVSCNPQSKDLFLERVKTFTTTNWAAKPNELSPLKCAQYGWCNEELDQLRCVTCSATIFAGMPDDWDSSAYSDICNEIKDKLKIGHQKLCPWPQNPCPPSFLSLPSRSAQQWKMEIRSAFCGLLELKGNLPELNEDTVASMKSLDNSCIEKLLTNVFRHSCDTDDEVLQAKV---------ACILAVTGWNASQPI--VEDPSITCSLCGKESGLWHYKSLSS 249
            T A S + N   + E+ P++ES       SK+ F  RV+TF++  WA KP ELSPL CA+YGW   E D L+C +C A + A +   +D   Y   C E+K  L   H+K C WP +P P  F  LP         E    F  L  L   LP L  + + +M   ++     L          TD+     K+         ACIL+V GW  S  +  ++   ITCS C ++ GLW ++ + S
Sbjct:   52 TSATSQSVNGSPQAEQ-PSLEST------SKEAFFSRVETFSSLKWAGKPFELSPLVCAKYGWVTVECDMLKCSSCQAFLCASLQPAFDFDRYKQRCAELKKALCTAHEKFCFWPDSPSPDRFGMLPLDEPAILVSEFLDRFQSLCHLDLQLPSLRPEDLKTMCLTEDKISLLLHLLEDELDHRTDERKTTIKLGSDIQVHVTACILSVCGWACSSSLESMQLSLITCSQCMRKVGLWGFQQIES 289
The following BLAST results are available for this feature:
BLAST of TCONS_00062727-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NIPA1.167e-2933.06Nuclear-interacting partner of ALK OS=Homo sapiens... [more]
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