TCONS_00062729-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00062729-protein
Unique NameTCONS_00062729-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length391

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00062729-protein ID=TCONS_00062729-protein|Name=TCONS_00062729-protein|organism=Clytia hemisphaerica|type=polypeptide|length=391bp
MPIEDYAEEGLKKIPNLELAQALFTLQTKHTSEEEKSEAKTLLEKEITDN
NMTSFYEEVCKQLNWKIDQSRLTTMKSENEKKLKELEDKIKDAEENLGEI
EIRDAHLDKAEFYVTIGDKDNSLTSLRKAYEKTTTLGHKLDNIFLQIRVG
FFFLDNDLITRNIEKAASLIEEGGDWDRRNRLKVYKGYYALTSRDFKGAA
TNFLESISTFTSYELMNYSKLVEYTILVSIISLKRAELGEKVVKGSEILE
CLHTLPKLRQYLQSLYDCQYKDFFLALADIERSLHCDRLFARHTTYYVRE
MRIMAYAQLLESYRSLTLEYMANAFGVSVEFIDRELSRFIAAGRLNCKID
KVGGIVETNRPDSKNYQYQAVIKQGDTLLNRIQKLSRVINL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_039302XLOC_039302Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00062729TCONS_00062729Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000717PCI_dom
IPR019585Rpn7/CSN1
IPR011991WHTH_DNA-bd_dom
IPR011990TPR-like_helical_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 69..103
NoneNo IPR availableSMARTSM00753PINTcoord: 292..375
e-value: 2.9E-21
score: 86.6
IPR000717Proteasome component (PCI) domainSMARTSM00088PINT_4coord: 292..375
e-value: 2.9E-21
score: 86.6
IPR000717Proteasome component (PCI) domainPFAMPF01399PCIcoord: 257..359
e-value: 2.8E-17
score: 63.0
IPR01958526S proteasome regulatory subunit Rpn7/COP9 signalosome complex subunit 1PFAMPF10602RPN7coord: 68..241
e-value: 1.2E-56
score: 191.0
IPR011991Winged helix-turn-helix DNA-binding domainGENE3D1.10.10.10coord: 286..369
e-value: 1.0E-16
score: 60.2
IPR011991Winged helix-turn-helix DNA-binding domainSUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 287..368
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 99..227

Blast
[Close]
BLAST of TCONS_00062729-protein vs. Swiss-Prot (Human)
Match: PSMD6 (26S proteasome non-ATPase regulatory subunit 6 OS=Homo sapiens GN=PSMD6 PE=1 SV=1)

HSP 1 Score: 493.426 bits (1269), Expect = 3.657e-175
Identity = 241/392 (61.48%), Postives = 301/392 (76.79%), Query Frame = 0 
Query:    1 MPIEDYAEEGLKKIPNLELAQALFTLQ-TKHTSEEEKSEAKTLLEKEITDNNMTSFYEEVCKQLNWKIDQSRLTTMKSENEKKLKELEDKIKDAEENLGEIEIRDAHLDKAEFYVTIGDKDNSLTSLRKAYEKTTTLGHKLDNIFLQIRVGFFFLDNDLITRNIEKAASLIEEGGDWDRRNRLKVYKGYYALTSRDFKGAATNFLESISTFTSYELMNYSKLVEYTILVSIISLKRAELGEKVVKGSEILECLHTLPKLRQYLQSLYDCQYKDFFLALADIERSLHCDRLFARHTTYYVREMRIMAYAQLLESYRSLTLEYMANAFGVSVEFIDRELSRFIAAGRLNCKIDKVGGIVETNRPDSKNYQYQAVIKQGDTLLNRIQKLSRVINL 391
            MP+E+  EEGL K P+L +AQ  F L   +H  +   +  +  L   + DNNM  +YE +CK L+W+ID   L  MK  NE +LK L+++++DAE+NLGE EIRDA + KAE+   IGDK+ +LT+ RK Y+KT  LGH+LD +F  +R+G F++DNDLITRN EKA SLIEEGGDWDRRNRLKVY+G Y +  RDFK AA  FL+++STFTSYELM+Y   V YT+ VS+I+L+R +L EKV+KG+EILE LH+LP +RQYL SLY+C+Y  FF +LA +E+ +  D LFA H  YYVREMRI AY+QLLESYRSLTL YMA AFGV VEFID+ELSRFIAAGRL+CKIDKV  IVETNRPDSKN+QYQ  IK+GD LLNR+QKLSRVIN+
Sbjct:    1 MPLENLEEEGLPKNPDLRIAQLRFLLSLPEHRGD---AAVRDELMAAVRDNNMAPYYEALCKSLDWQIDVDLLNKMKKANEDELKRLDEELEDAEKNLGESEIRDAMMAKAEYLCRIGDKEGALTAFRKTYDKTVALGHRLDIVFYLLRIGLFYMDNDLITRNTEKAKSLIEEGGDWDRRNRLKVYQGLYCVAIRDFKQAAELFLDTVSTFTSYELMDYKTFVTYTVYVSMIALERPDLREKVIKGAEILEVLHSLPAVRQYLFSLYECRYSVFFQSLAVVEQEMKKDWLFAPHYRYYVREMRIHAYSQLLESYRSLTLGYMAEAFGVGVEFIDQELSRFIAAGRLHCKIDKVNEIVETNRPDSKNWQYQETIKKGDLLLNRVQKLSRVINM 389
The following BLAST results are available for this feature:
BLAST of TCONS_00062729-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PSMD63.657e-17561.4826S proteasome non-ATPase regulatory subunit 6 OS=... [more]
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