TCONS_00062807-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00062807-protein
Unique NameTCONS_00062807-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length127

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00062807-protein ID=TCONS_00062807-protein|Name=TCONS_00062807-protein|organism=Clytia hemisphaerica|type=polypeptide|length=127bp
MSSSDLIPNPEIHTLEVATSTEGEDETCVTYVMHHEDHTIGNSLRYMILK
NPEVEYCGYSVPHPSEEKINLRIQTSSKPAVEVLKTGLVNLQKVSLHALD
TFQEAVMNFKQNRKENNEQGDVEMDSD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_039350XLOC_039350Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00062807TCONS_00062807Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009025RBP11-like_dimer
IPR008193RNA_pol_Rpb11_13-16kDa_CS
IPR033898RNAP_AC19
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
GO:0003677DNA binding
GO:0003899DNA-directed 5'-3' RNA polymerase activity
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006351 transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0046983 protein dimerization activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 99..119
NoneNo IPR availableGENE3D3.30.1360.10coord: 9..121
e-value: 7.7E-36
score: 121.7
IPR009025DNA-directed RNA polymerase, RBP11-like dimerisation domainPFAMPF13656RNA_pol_L_2coord: 29..95
e-value: 9.3E-27
score: 92.6
IPR009025DNA-directed RNA polymerase, RBP11-like dimerisation domainSUPERFAMILY55257RBP11-like subunits of RNA polymerasecoord: 21..106
IPR008193DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved sitePROSITEPS01154RNA_POL_L_13KDcoord: 33..64
IPR033898DNA-directed RNA polymerases I and III subunit AC19CDDcd07029RNAP_I_III_AC19coord: 22..102
e-value: 1.01539E-40
score: 131.585

Blast
[Close]
BLAST of TCONS_00062807-protein vs. Swiss-Prot (Human)
Match: RPAC2 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Homo sapiens GN=POLR1D PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.764e-36
Identity = 55/97 (56.70%), Postives = 69/97 (71.13%), Query Frame = 0 
Query:   23 GEDETCVTYVMHHEDHTIGNSLRYMILKNPEVEYCGYSVPHPSEEKINLRIQT-SSKPAVEVLKTGLVNLQKVSLHALDTFQEAVMNFKQNRKENNE 118
            G D  CVT+V+H EDHT+GNSLRYMI+KNPEVE+CGY+  HPSE KINLRIQT  + PAVE  + GL  L  V  H LD F+ ++ ++K  +   NE
Sbjct:   34 GTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRGTLPAVEPFQRGLNELMNVCQHVLDKFEASIKDYKDQKASRNE 130
The following BLAST results are available for this feature:
BLAST of TCONS_00062807-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RPAC21.764e-3656.70DNA-directed RNA polymerases I and III subunit RPA... [more]
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