TCONS_00062825-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00062825-protein
Unique Name	TCONS_00062825-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	743

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00062825-protein ID=TCONS_00062825-protein|Name=TCONS_00062825-protein|organism=Clytia hemisphaerica|type=polypeptide|length=743bp
MSSKYSPPSSSDCQTNRFGEREDLETSGELDNPSFEGIEYDSFAQYQPED
LEEDYLNRQIEDEDDGQTEEELFEAGLKKSLPSTELRKIHTLARAGTLHR
IKVRTPLEDVNYDATDGNVPGPSSGQNTLEVEDVFLSDDLMVEPVDPENI
RYMTTTLQHKRSVRQRVKGKNEERPLSGWENFKLERAMRYTKFKNNVKES
FTQFTIWKGHMKEIEGLFGTGVLSYFTFLRWLLYINLIVSLLTLCFLFVP
QMIYEQSARILPSSDFTGIDLLTGEGYFNHTELYYGTYTDKAINGRYNMR
YAYLLVGGGYFLICIIVLVKSMASSYNQNFIISGGDNVAPFSSKVFCAWD
YGICNKETARIKMKSFAQDMLETLGSKRGKFKTDCFSFCLVIFLRVLMNM
ITMALLFGSAFLIYYVSDMSVEESFESNHVEHGIKGLLPAITMSVINLIV
PSGFRLIASIENYSNPKYELTINLLRTITLKLASLVVYVVTVIVRLSTIN
REVRQEKCWENFIGQAFYKLAVIDFIAVLLATFFEEFIRNIVAKKCCSKH
LPGFDISKNVLNLIYCQGICWLGTFYCPLLPFINVLKLFITFYVKKVSVV
RNCRPSTRPFKASKMLLWFLCLLSLMLMLALVVIGYIMMDDETLKPSTIC
GPFRGQERIYDIVSDIINETPTTIRKIVNSLSSLPVIAAILFFMGLLSYY
FRMRKVSNEKKIQLLKQQLALAGQDKKFLIEKLRLIMRAEHVD

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_039355	XLOC_039355	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00062825	TCONS_00062825	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR012496	TMC

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012496	TMC	PFAM	PF07810	TMC	coord: 508..613 e-value: 2.2E-38 score: 131.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35

Blast

[Close]

BLAST of TCONS_00062825-protein vs. Swiss-Prot (Human)
Match: TMC5 (Transmembrane channel-like protein 5 OS=Homo sapiens GN=TMC5 PE=2 SV=3)

HSP 1 Score: 284.648 bits (727), Expect = 3.234e-83
Identity = 199/613 (32.46%), Postives = 319/613 (52.04%), Query Frame = 0

Query:  150 IRYMTTTLQHKRSVRQRV---KGKNEERPLSGWENFK----LERAMRYTKFKNNVKESFTQFTIWKGHMKEIEGLFGTGVLSYFTFLRWLLYINLIVSLLTLCFLFVPQMIYEQSARILPSSDFTGIDLLTGEGYFNHTELYYGTYTDKAIN-----GRYNMRYAYLLVGGGYFLICIIVLVKSMASSYNQNFI----ISGGDNVAPFSSKVFCAWDYGICNKETARIKMKSFAQDMLETLGSKRGKFKTDCFSFCLVIFLRVLMN-MITMALLFGSAFLIYYVSDMSVEESFESNHVEHGIKGLLPAITMSVINLIVPSGFRLIASIENYSNPKYELTINLLRTITLKLA--SLVVYVVTVIVRLSTINREVRQEKCWENFIGQAFYKLAVIDFIAVLLATFFEEFIRNIVAKK-CCSKHLPGFDISKNVLNLIYCQGICWLGTFYCPLLPFINVLKLFITFYVKKVSVVRNCRPSTRPFKASKMLLWFLCLLSLMLMLALVVIGYIMMDDETLKPSTICGPFRGQER-IYDIVS--DIINETPTTI------RKIVNSLSSLPVIAAILFFMGLLSYYFRMRKVSNEKKIQLLKQQLALAGQDKKFLIEKL 733
            IR    T++ KR++R+ V   K K   R L      +    + RA  Y + KN++ E     ++W+  +K I G FGT VLSYF FLRWLL  N+   +L   F+ +PQ    +   +     FTG++  TG GYF  T +YYG YT+  I        YNM+ AY+   G     C   L+ SMA  +  NFI     SGG      +  +FC WD+ + +++  ++K K+ + ++ E L   R +     F+  L  F   ++  +++  +       +YY+++ ++E  F   H   G   LLP + +S INL VP  + +   +E Y  P++E+ + L+R I LK++   ++ Y     V LS        E+CWE  IGQ  Y+L ++DF+  L+ +F  EF+R I+  +   S  L  FDI++NVL LIY Q + W+G F+CPLLPFI ++ LFI FY K +S++ N +P ++ ++AS+M+ +F+ LL       ++    I +    LKPS  CGPFRG    I+ I S  D ++  P  +      R ++ S+    ++  I+    +++Y +       +  I+LL +Q+   G+DK FLIEKL
Sbjct:  369 IRNQPRTMEEKRNLRKIVDKEKSKQTHRILQLNCCIQCLNSISRA--YRRSKNSLSEILNSISLWQKTLKIIGGKFGTSVLSYFNFLRWLLKFNIFSFILNFSFIIIPQFTVAKKNTL----QFTGLEFFTGVGYFRDTVMYYGFYTNSTIQHGNSGASYNMQLAYIFTIGACLTTCFFSLLFSMAKYFRNNFINPHIYSGG-----ITKLIFC-WDFTVTHEKAVKLKQKNLSTEIRENLSELRQENSKLTFNQLLTRFSAYMVAWVVSTGVAIACCAAVYYLAEYNLE--FLKTHSNPGAVLLLPFV-VSCINLAVPCIYSMFRLVERYEMPRHEVYVLLIRNIFLKISIIGILCYYWLNTVALSG-------EECWETLIGQDIYRLLLMDFVFSLVNSFLGEFLRRIIGMQLITSLGLQEFDIARNVLELIYAQTLVWIGIFFCPLLPFIQMIMLFIMFYSKNISLMMNFQPPSKAWRASQMMTFFIFLLFFPSFTGVLCTLAITI--WRLKPSADCGPFRGLPLFIHSIYSWIDTLSTRPGYLWVVWIYRNLIGSVHFFFILTLIVL---IITYLYWQITEGRKIMIRLLHEQIINEGKDKMFLIEKL 954

The following BLAST results are available for this feature:

BLAST of TCONS_00062825-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00062825-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TMC5	3.234e-83	32.46	Transmembrane channel-like protein 5 OS=Homo sapie...	[more]

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TCONS_00062825-protein (polypeptide) - C. hemisphaerica