TCONS_00063125-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00063125-protein
Unique NameTCONS_00063125-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length276

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00063125-protein ID=TCONS_00063125-protein|Name=TCONS_00063125-protein|organism=Clytia hemisphaerica|type=polypeptide|length=276bp
GRDGRDGIDGKDGKQGPAEKPGKNGADGIDGINGVDGKEGKDGIHGKDGK
DCKMGMRGRDGLNGTNGKDGMDGKDGKDGLNGIDGKDGLNGTNGRDGVDG
RDGLNDSNGIDGLDGINGANGMNGKDSPKRHWKECAWDKSFYSELDAGLL
KICTFRKKSIETYLRVEVISNLRIWNCDDCCSRWFVTFNGQECTPVPIDG
TVYMKFGKGNREKNLHRPQVITGRCKISKIGYINVGFNVGECAGAGKNTA
DAFTGWQQATRIYVEEMEGPQSDLVS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_039542XLOC_039542Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00063125TCONS_00063125Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008160Collagen
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008160Collagen triple helix repeatPFAMPF01391Collagencoord: 73..126
e-value: 1.1E-7
score: 31.4
coord: 1..51
e-value: 8.4E-8
score: 31.8
coord: 43..101
e-value: 8.2E-9
score: 35.0
NoneNo IPR availableGENE3D2.160.20.50coord: 1..56
e-value: 0.047
score: 13.0
coord: 57..131
e-value: 9.8E-6
score: 24.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..129

Blast
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BLAST of TCONS_00063125-protein vs. Swiss-Prot (Human)
Match: CTHR1 (Collagen triple helix repeat-containing protein 1 OS=Homo sapiens GN=CTHRC1 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 6.622e-30
Identity = 68/188 (36.17%), Postives = 97/188 (51.60%), Query Frame = 0 
Query:   87 DGLNGTNGRDGVDGRDGLNDSNGIDGLDGINGANGMNGKDSPKRHW----KECAWDKSFYSELDAGLLKICTFRKKSIETYLRVEVISNLRIWNCDDCCSRWFVTFNGQECT-PVPIDGTVYMKFGKG--NREKNLHRPQVITGRCKISKIGYINVGFNVGECAGAGKNTADAFTGWQQATRIYVEEM 267
             G  G  GRDG  G +G+  + GI G DG  G  G   ++S +  W    K+C+W    Y  +D G +  CTF K    + LRV    +LR+   + CC RW+ TFNG EC+ P+PI+  +Y+  G    N   N+HR   + G C+    G ++V   VG C+   K   DA TGW   +RI +EE+
Sbjct:   57 QGPAGVPGRDGSPGANGIPGTPGIPGRDGFKGEKGECLRESFEESWTPNYKQCSWSSLNYG-IDLGKIAECTFTKMRSNSALRVLFSGSLRLKCRNACCQRWYFTFNGAECSGPLPIEAIIYLDQGSPEMNSTINIHRTSSVEGLCEGIGAGLVDVAIWVGTCSDYPK--GDASTGWNSVSRIIIEEL 241
The following BLAST results are available for this feature:
BLAST of TCONS_00063125-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CTHR16.622e-3036.17Collagen triple helix repeat-containing protein 1 ... [more]
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