TCONS_00063185-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00063185-protein
Unique Name	TCONS_00063185-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1040

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00063185-protein ID=TCONS_00063185-protein|Name=TCONS_00063185-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1040bp
MPEEQDFTQVSSYTNWMKKMSDKIKKHNELKNTQMTATINNDIKKNENSS
KMNNENRSRSEKKGKEEIYEKSWAVCQCHIEGEEDFADEKRRNITSSLQE
DRQKRIRRHINSTTSVEETESIADDFSSSPSTSLCCNICLNSSSNLTTKT
TSTSTSSSKKHRKRKGRNAHRVLLNNHPSQKQVYSSYSTGQQKINKRSSA
PGDTRFNGGSRTHERIIENSFDNDVFEDCFVENKFAVKKSFSYDNAILKN
SFAREKENLRKTLSGEKPIRDGDGPFVIDNFTSLNHLQKQQEKRDFIVYK
NGAQNDNRNSSVPIDRRPQSEYGRRKHVTYDVKTLYRVNSDAPPRSWTLD
ISRSSDSDDNMLFPKLRKNFKFGTKPNGRAASDGCTTQGSRKGSQRRTTS
AEFIQEFLGPADTPVNARLFGGKKGVQYEIERAKSYGYVIHPCSKLRQYW
DLLIMTMLVLNMMVLPLDIAFFDDNSLISFHVISDTLCMVDIILNFRTGY
HLRKEKHEFELGHKKIAIHYLKTWFTLDLISSLPLHYILLAVSGQNVTLG
LKGASRALKFLKVAKLLNLLKLLRLSRIIRGIAQYEEVYCVTTGFIRYIK
LVCMMLMVAHWNGCLHFLVPMLQDFPEKCWVQECKIVNEPWYVQYGWALF
KTLSHMLCIGYGRYIPALLDEALITIFSMVTGATFYALFIAHSMAFIIQR
DSSKSTYQEKIKQIEEYMHHRNVPPEIKKRISNYFEHKYHQGRFFDEQAI
MSVIGKPLREEIVHHTCKDLVESVPFLKAASPHFVTAVLDRLTFDVYLSG
DAVIKEGTTGDEMFFVRKGCLDVSVKGRLIYQLKGGEYFGDICMLTDDTK
HIITVEARTTCDLFSLSYKTLATLLIQYPEVRPILEQAALNQLMNITQTI
ELLNAAREKQKEKNGSNGPYGSNNNSPVVKKRSTLSRQSSLNQLKELING
TVETLAAKIKTFKEENDVIAERFEDSMTSQEMMPSQDNTPCKQKKDESAI
IVENELEEGTHKNKDSDPTTGSDHGLDDPTKDDFHVSTSF

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_039592	XLOC_039592	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00063185	TCONS_00063185	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000595	cNMP-bd_dom
IPR005821	Ion_trans_dom
IPR014710	RmlC-like_jellyroll
IPR013621	Ion_trans_N
IPR018488	cNMP-bd_CS
IPR018490	cNMP-bd-like

Vocabulary: **Molecular Function**
Term	Definition
GO:0005216	ion channel activity

Vocabulary: **Biological Process**
Term	Definition
GO:0055085	transmembrane transport
GO:0006811	ion transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006811	ion transport
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016020	membrane
molecular_function	GO:0005216	ion channel activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 893..913
None	No IPR available	GENE3D	1.10.287.70		coord: 595..704 e-value: 5.3E-10 score: 38.4
None	No IPR available	GENE3D	1.20.120.350		coord: 446..589 e-value: 1.5E-10 score: 40.4
None	No IPR available	GENE3D	1.10.287.630		coord: 705..762 e-value: 1.4E-21 score: 76.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 147..211
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 908..936
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 373..397
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 974..1040
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..64
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 99..130
None	No IPR available	CDD	cd00038	CAP_ED	coord: 776..882 e-value: 1.87094E-18 score: 81.9885
None	No IPR available	SUPERFAMILY	81324	Voltage-gated potassium channels	coord: 442..697
IPR000595	Cyclic nucleotide-binding domain	SMART	SM00100	cnmp_10	coord: 776..893 e-value: 1.2E-14 score: 64.7
IPR000595	Cyclic nucleotide-binding domain	PFAM	PF00027	cNMP_binding	coord: 797..877 e-value: 1.8E-11 score: 43.8
IPR000595	Cyclic nucleotide-binding domain	PROSITE	PS50042	CNMP_BINDING_3	coord: 776..892 score: 21.719
IPR005821	Ion transport domain	PFAM	PF00520	Ion_trans	coord: 448..692 e-value: 4.1E-18 score: 65.4
IPR014710	RmlC-like jelly roll fold	GENE3D	2.60.120.10		coord: 763..906 e-value: 2.6E-26 score: 91.5
IPR013621	Ion transport N-terminal	PFAM	PF08412	Ion_trans_N	coord: 405..445 e-value: 1.4E-8 score: 34.1
IPR018488	Cyclic nucleotide-binding, conserved site	PROSITE	PS00888	CNMP_BINDING_1	coord: 803..819
IPR018490	Cyclic nucleotide-binding-like	SUPERFAMILY	51206	cAMP-binding domain-like	coord: 702..892

Blast

[Close]

BLAST of TCONS_00063185-protein vs. Swiss-Prot (Human)
Match: HCN3 (Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 3 OS=Homo sapiens GN=HCN3 PE=2 SV=2)

HSP 1 Score: 421.394 bits (1082), Expect = 2.612e-133
Identity = 227/521 (43.57%), Postives = 336/521 (64.49%), Query Frame = 0

Query:  407 FLGPADTPVNARLFGGKKGVQYEIERAKSYG-YVIHPCSKLRQYWDLLIMTMLVLNMMVLPLDIAFF-DDNS--LISFHVISDTLCMVDIILNFRTGYHLRKEKHEFELGHKKIAIHYLKTWFTLDLISSLPLHYILLAVSGQ-NVTLGLKGASRALKFLKVAKLLNLLKLLRLSRIIRGIAQYEEVYCVT----TGFIRYIKLVCMMLMVAHWNGCLHFLVPMLQDFPEKCWVQECKIVNEPWYVQYGWALFKTLSHMLCIGYGRYIPALLDEALITIFSMVTGATFYALFIAHSMAFIIQRDSSKSTYQEKIKQIEEYMHHRNVPPEIKKRISNYFEHKYHQGRFFDEQAIMSVIGKPLREEIVHHTCKDLVESVPFLKAASPHFVTAVLDRLTFDVYLSGDAVIKEGTTGDEMFFVRKGCLDVSVKGRLIYQLKGGEYFGDICMLTDDTKHIITVEARTTCDLFSLSYKTLATLLIQYPEVRPILEQAALNQLMNITQTIELLNAAREKQKEKNGSNG 918
             L P     + R+FG  K V+ E ER KS G ++IHP S  R YWDL+++ ++V N++VLP+ I FF ++NS   I F+V+SDT  ++D++LNFRTG  + +E  E  L  + I   YL+TWF +DLISS+P+ YI L V  +  +   +   +RAL+ ++  K+L+LL+LLRLSR+IR I Q+EE++ +T    +  +R   L+ MML++ HW+GCL FLVPMLQDFP  CWV    +VN  W  QY  ALFK +SHMLCIGYG+  P  + +  +T+ SM+ GAT YA+FI H+ A I   DSS+  YQEK KQ+E+YM    +P + ++RI  Y+EH+Y QG+ FDE++I+  + +PLREEI++ TC+ LV  +P    A P FVTAVL +L F+V+  GD V++EG+ G +M+F++ G L V  +G    +L  G YFG+IC+LT   +   +V A T C L+SLS      +L ++P +R   E  A+++L+ I +   +L   R++ +   GS+G
Sbjct:   52 LLQPTVNKFSLRVFGSHKAVEIEQERVKSAGAWIIHPYSDFRFYWDLIMLLLMVGNLIVLPVGITFFKEENSPPWIVFNVLSDTFFLLDLVLNFRTGI-VVEEGAEILLAPRAIRTRYLRTWFLVDLISSIPVDYIFLVVELEPRLDAEVYKTARALRIVRFTKILSLLRLLRLSRLIRYIHQWEEIFHMTYDLASAVVRIFNLIGMMLLLCHWDGCLQFLVPMLQDFPPDCWVSINHMVNHSWGRQYSHALFKAMSHMLCIGYGQQAPVGMPDVWLTMLSMIVGATCYAMFIGHATALIQSLDSSRRQYQEKYKQVEQYMSFHKLPADTRQRIHEYYEHRY-QGKMFDEESILGELSEPLREEIINFTCRGLVAHMPLFAHADPSFVTAVLTKLRFEVFQPGDLVVREGSVGRKMYFIQHGLLSVLARGARDTRLTDGSYFGEICLLTRG-RRTASVRADTYCRLYSLSVDHFNAVLEEFPMMRRAFETVAMDRLLRIGKKNSILQ--RKRSEPSPGSSG 567

The following BLAST results are available for this feature:

BLAST of TCONS_00063185-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00063185-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
HCN3	2.612e-133	43.57	Potassium/sodium hyperpolarization-activated cycli...	[more]

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TCONS_00063185-protein (polypeptide) - C. hemisphaerica