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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00063400-protein ID=TCONS_00063400-protein|Name=TCONS_00063400-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1281bp
GRYSNRNKKQQCNRCNSEHQPERCPANGKSCFVCQGKNHFAKTPACPKTI
KRVSTERKRSQVQEKKTHTATTKESATINKVSTTTPNNKWVDVEIGGIKQ
KLYADTGSEFTIITPQHYSPLMGELEESDLNFRPWGGNNLLDVQGMVNTT
IHNSKGAHVYSKVYVIDGFQPEPLLGDTDAEKLGIITFNKDGREPTGTPI
RRIPDKIRRNLEVDVETHPPNTTAVPQERVKAQTLVEKFRDLVFDDNKVG
CLKIEPIHLEYAKDFKPKQQPFRNIPFHYQEDVSKLLQFLREQGVITDVD
PRNSYDCVMNVVITDKKNGQTRMNIDNTPRNPGMQRTKFHVQTPQEIRHE
LKEATVFSEMDMGWGFHQLPLDEATKKKSIFQTHEGLHRMERLYFGPTAS
SGIFHNEVRKCFAGLKGVVTLHDNILVYGKDYDDHYTNLKQVLNRCAEAG
IILKLSKSNFCLTRVKWFGRDFHSNGVTADQDKIRNIQEGGRPNNTEDVR
SLLMACQYNAKFTYDNSLKLSYEEVTAPLRRLLKKDQKFIWGTEQEQAYQ
KLMTILNNPATLQSYNPQRKTHIVADTSEVGTQCSIYQEKTRETGTKTWV
PIDHVSRALTQQEQDYSPIERESLGLQWGLEQFRYYVVGSSFTGWTDHEP
LLPIYNNQQKLTSKRISKHRDRVQDLCYQLRYLKGKEMPCDYGSRHPNSI
DHLTKQEQASQGFDVGNTIYVRKIINLHNSPNAIDIATIKEEAQDDPEYQ
RLIRALKEGEKIPPRETPINKTIYSELCIVDGLVYRGDKIVLPNKQETND
HPNVRTKILDIAHEGHPGATMMKRFIRTRIWFPSMDKRIEEVVRGCLACQ
AATNTKHRDPNTASKPPEELWQKLSADHWGPTPDGFHLLVVIDELSRYPE
VAVVKGTGAEQNIEAFDAIFARHGYCKRLKTDNGPPFNGNENHLLQEYFR
WAGIDHKPTYSAEDLEANGLAEAFMKICRKVWHTALIEKDNPRAEINKML
QLYRATPHPTTGQAPAELLFGRKFQSRLPRGPKTDQRGNVEEAKQHDQEV
KRKQTEAKDSKSYVKPHNIKINDHVLLKQRSTKTKPPYDPEPYTVTSITG
HQITATRGHKTFTRDAQKWKQFTQREKPDYKNLRQADKDANTWELDEETT
EQQAPQAQQQIEQPNVEENQQVDIQASQPPDRTAKQGTSTTSSIQRLRNE
HLKIEDKTHKKQIYSIDTEIHILLETFTLIIRCSLTARISSFSPSFYILP
RFRFIEFIRCSLTARIHFQLFTHSSASGVHV Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | GENE3D | 3.30.70.270 | | coord: 395..476
e-value: 5.2E-14
score: 51.6 |
| None | No IPR available | GENE3D | 3.10.10.10 | | coord: 256..394
e-value: 7.4E-14
score: 51.2 |
| None | No IPR available | GENE3D | 3.30.70.270 | | coord: 477..615
e-value: 6.8E-19
score: 67.5 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..25 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1027..1095 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1143..1193 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 52..76 |
| None | No IPR available | CDD | cd01647 | RT_LTR | coord: 311..470
e-value: 8.67658E-29
score: 114.23 |
| None | No IPR available | SUPERFAMILY | 56672 | DNA/RNA polymerases | coord: 246..682 |
| IPR012337 | Ribonuclease H-like domain | GENE3D | 3.30.420.10 | | coord: 862..1063
e-value: 7.8E-25
score: 87.1 |
| IPR012337 | Ribonuclease H-like domain | SUPERFAMILY | 53098 | Ribonuclease H-like | coord: 871..1025 |
| IPR021109 | Aspartic peptidase domain | GENE3D | 2.40.70.10 | | coord: 81..193
e-value: 4.7E-6
score: 26.5 |
| IPR021109 | Aspartic peptidase domain | SUPERFAMILY | 50630 | Acid proteases | coord: 76..176 |
| IPR001584 | Integrase, catalytic core | PROSITE | PS50994 | INTEGRASE | coord: 862..1023
score: 16.608 |
Blast
The following BLAST results are available for this feature:
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