TCONS_00063467-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00063467-protein
Unique NameTCONS_00063467-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length249

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00063467-protein ID=TCONS_00063467-protein|Name=TCONS_00063467-protein|organism=Clytia hemisphaerica|type=polypeptide|length=249bp
MAEYLASIFGTEKDKVNCSFYFKIGACRHGDKCSRLHNKPTFSQTILLQN
MYQNPQNQATNPDGMPVTTAAAAAHIMSDVEAQEHYDSFFEDVFLELEEK
YGEIEEMNVCDNLGDHLVGNVYVKFRYEEDAEKASNQVNNRWYNGQPIYA
ELSPVTDFRESCCRQYEMGECTRGGFCNFMHLKPISRELRRRLYGRRRGG
AGVGGGASSGPLVRRGRSRSFSPSPPRRKSRSRSPKRRSPRRRRSRSPR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_039777XLOC_039777Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00063467TCONS_00063467Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009145U2AF_small
IPR003954RRM_dom_euk
IPR000571Znf_CCCH
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003676nucleic acid binding
GO:0046872metal ion binding
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
Vocabulary: Cellular Component
TermDefinition
GO:0089701U2AF
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0089701 U2AF
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009145U2 auxiliary factor small subunitPRINTSPR01848U2AUXFACTORcoord: 174..186
score: 65.38
coord: 37..57
score: 54.76
coord: 83..98
score: 48.01
coord: 139..163
score: 57.27
coord: 18..37
score: 79.77
coord: 112..134
score: 64.03
IPR003954RNA recognition motif domain, eukaryoteSMARTSM00361rrm2_1coord: 74..151
e-value: 7.2E-18
score: 75.4
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 157..183
e-value: 0.24
score: 20.5
coord: 13..39
e-value: 0.0071
score: 25.6
IPR000571Zinc finger, CCCH-typePFAMPF00642zf-CCCHcoord: 15..38
e-value: 1.1E-6
score: 28.3
coord: 158..182
e-value: 4.8E-6
score: 26.2
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 12..40
score: 12.455
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 157..184
score: 11.911
NoneNo IPR availableGENE3D3.30.70.330coord: 45..154
e-value: 8.5E-21
score: 73.4
NoneNo IPR availableGENE3D4.10.1000.10coord: 11..44
e-value: 9.2E-4
score: 18.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 197..249
NoneNo IPR availableCDDcd12538RRM_U2AF35coord: 43..154
e-value: 2.83064E-68
score: 207.203
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 96..148
e-value: 1.9E-5
score: 24.3
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 73..155
score: 9.746
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 86..158

Blast
[Close]
BLAST of TCONS_00063467-protein vs. Swiss-Prot (Human)
Match: U2AF5 (Splicing factor U2AF 35 kDa subunit-like protein OS=Homo sapiens GN=U2AF1L5 PE=1 SV=1)

HSP 1 Score: 333.954 bits (855), Expect = 5.921e-117
Identity = 156/194 (80.41%), Postives = 170/194 (87.63%), Query Frame = 0 
Query:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDKCSRLHNKPTFSQTILLQNMYQNPQNQATNPDGMPVTTAAAAAHIMSDVEAQEHYDSFFEDVFLELEEKYGEIEEMNVCDNLGDHLVGNVYVKFRYEEDAEKASNQVNNRWYNGQPIYAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLKPISRELRRRLY 194
            MAEYLASIFGTEKDKVNCSFYFKIGACRHGD+CSRLHNKPTFSQTI L N+Y+NPQN + + DG+           +SDVE QEHYD FFE+VF E+EEKYGE+EEMNVCDNLGDHLVGNVYVKFR EEDAEKA   +NNRW+NGQPI+AELSPVTDFRE+CCRQYEMGECTRGGFCNFMHLKPISRELRR LY
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSADGLRCA--------VSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELY 186
The following BLAST results are available for this feature:
BLAST of TCONS_00063467-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
U2AF55.921e-11780.41Splicing factor U2AF 35 kDa subunit-like protein O... [more]
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