TCONS_00063568-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00063568-protein
Unique NameTCONS_00063568-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length366

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00063568-protein ID=TCONS_00063568-protein|Name=TCONS_00063568-protein|organism=Clytia hemisphaerica|type=polypeptide|length=366bp
MGFNKPSKIQETALPMLLADPPNNMIAQSQSGTGKTAAFVLAMLSRVDKT
KPYPQALCLSPTFELANQTGSVLEKMGKFLIEDGLKVAYALRGNRLEKGS
KCDAQIIIGTPGSLLDWIMRHRFFDPKKINIFVLDEADVMISQQGHQDQS
IRIKKALNPSAQLLLFSATYEASVMNFAQNIVNDAVIIRLRREEESLDNI
KQFYVKCDTAESKYEALANLYGSLTIGQTMVFCHTKKAVNWLSEKLSKDG
HAVALLTGELEIEQRLAVLNRFRDGKEKVLITTNVAARGIDVEQVTIVIN
YDIPINHMQQPDXILQKINFFVKKFFVKKNIFVINGRKKFFLRPNFEIML
SLIIIKMFSTAVNQVN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_039854XLOC_039854Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00063568TCONS_00063568Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014001Helicase_ATP-bd
IPR001650Helicase_C
IPR011545DEAD/DEAH_box_helicase_dom
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014001Helicase superfamily 1/2, ATP-binding domainSMARTSM00487ultradead3coord: 2..203
e-value: 4.7E-44
score: 162.3
IPR014001Helicase superfamily 1/2, ATP-binding domainPROSITEPS51192HELICASE_ATP_BIND_1coord: 16..188
score: 24.587
IPR001650Helicase, C-terminalSMARTSM00490helicmild6coord: 240..307
e-value: 2.7E-13
score: 60.2
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 213..316
e-value: 1.1E-20
score: 74.0
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 199..366
score: 15.219
NoneNo IPR availableGENE3D3.40.50.300coord: 205..319
e-value: 1.7E-33
score: 115.5
NoneNo IPR availableGENE3D3.40.50.300coord: 1..204
e-value: 3.8E-37
score: 127.4
NoneNo IPR availableCDDcd00079HELICccoord: 199..309
e-value: 5.00481E-27
score: 103.086
IPR011545DEAD/DEAH box helicase domainPFAMPF00270DEADcoord: 8..174
e-value: 5.5E-31
score: 107.6
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 54..308

Blast
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BLAST of TCONS_00063568-protein vs. Swiss-Prot (Human)
Match: DD19A (ATP-dependent RNA helicase DDX19A OS=Homo sapiens GN=DDX19A PE=1 SV=1)

HSP 1 Score: 447.973 bits (1151), Expect = 1.997e-156
Identity = 204/312 (65.38%), Postives = 259/312 (83.01%), Query Frame = 0 
Query:    1 MGFNKPSKIQETALPMLLADPPNNMIAQSQSGTGKTAAFVLAMLSRVDKTKPYPQALCLSPTFELANQTGSVLEKMGKFLIEDGLKVAYALRGNRLEKGSKCDAQIIIGTPGSLLDWIMRHRFFDPKKINIFVLDEADVMISQQGHQDQSIRIKKALNPSAQLLLFSATYEASVMNFAQNIVNDAVIIRLRREEESLDNIKQFYVKCDTAESKYEALANLYGSLTIGQTMVFCHTKKAVNWLSEKLSKDGHAVALLTGELEIEQRLAVLNRFRDGKEKVLITTNVAARGIDVEQVTIVINYDIPINHMQQPD 312
            MGFN+PSKIQE ALPM+LA+PP N+IAQSQSGTGKTAAFVLAMLSRV+ +  YPQ LCLSPT+ELA QTG V+E+MGKF  E  LK+AYA+RGN+LE+G K   QI+IGTPG++LDW  + +F DPKKI +FVLDEADVMI+ QGHQDQSIRI++ L  + Q+LLFSAT+E SV  FAQ +V D  +I+L+REEE+LD IKQ+YV C + + K++AL NLYG++TI Q M+FCHT+K  +WL+ +LSK+GH VALL+GE+ +EQR AV+ RFR+GKEKVL+TTNV ARGIDVEQV++VIN+D+P++    PD
Sbjct:  109 MGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAMLSRVEPSDRYPQCLCLSPTYELALQTGKVIEQMGKFYPE--LKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPD 418
The following BLAST results are available for this feature:
BLAST of TCONS_00063568-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DD19A1.997e-15665.38ATP-dependent RNA helicase DDX19A OS=Homo sapiens ... [more]
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