TCONS_00063679-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00063679-protein
Unique NameTCONS_00063679-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length277

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00063679-protein ID=TCONS_00063679-protein|Name=TCONS_00063679-protein|organism=Clytia hemisphaerica|type=polypeptide|length=277bp
MADEKWSTQKIKSRIEENELDLSLCGISKVPVLNLLPFTKVTVLDLSCNK
INSIPDSFSRLDHLVQIDLSKNALTELPSNFGNLGKLKRLDLFQNHLEEL
PISFHKLKSLSWLDLKANPIQERLQTIVGDCLKPIECQSCARNVVSYYNN
VYKEKMLQKEKELKREQNRLNKLRKEEEQMKLKRKEEKKQRLEEEKRKKA
TTTQHQDQKQTTSKDSSSVKETIDSNGSCGSWFYLVIFLILIATGIAFVL
LHKDAVQIRIFFSELYKGFSRKRFEEL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_039920XLOC_039920Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00063679TCONS_00063679Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR001611Leu-rich_rpt
IPR032675L_dom-like
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 149..205
NoneNo IPR availableGENE3D3.30.70.330coord: 150..263
e-value: 0.0011
score: 18.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 174..220
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 84..106
e-value: 6.5
score: 14.8
coord: 61..83
e-value: 1.9
score: 17.5
coord: 38..60
e-value: 18.0
score: 11.2
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 19..74
e-value: 7.4E-8
score: 31.9
coord: 78..120
e-value: 1.8E-7
score: 30.7
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 63..84
score: 6.095
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 16..37
score: 5.771
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 40..61
score: 7.535
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 109..131
score: 4.524
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 86..108
score: 6.803
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 2..144
e-value: 1.6E-26
score: 92.1
IPR032675Leucine-rich repeat domain, L domain-likeSUPERFAMILY52058L domain-likecoord: 19..128

Blast
[Close]
BLAST of TCONS_00063679-protein vs. Swiss-Prot (Human)
Match: LRC59 (Leucine-rich repeat-containing protein 59 OS=Homo sapiens GN=LRRC59 PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 9.958e-45
Identity = 85/193 (44.04%), Postives = 124/193 (64.25%), Query Frame = 0 
Query:   11 IKSRIEENELDLSLCGISKVPVLNLLPFTKVTVLDLSCNKINSIPDSFSRLDHLVQIDLSKNALTELPSNFGNLGKLKRLDLFQNHLEELPISFHKLKSLSWLDLKANPIQERLQTIVGDCLKPIECQSCARNVVSYYNNVY--KEKMLQKEKELKR--EQNRLNKLRKEEEQMKLKRKEEKKQRLEEEKRKK 199
            ++ +++ NELDLSL  +++VPV  L    K T+LDLSCNK+ ++P  F  L HLV++DLSKN L +LP++FG L  L+ LDL  N L  LP+SF +LK+L WLDLK NP+   L  + GDCL   +C+ CA  V+ +   V   +E+  Q+  E++R  E+ R  K R +E Q +  RK EK +  E+E+R+K
Sbjct:   11 LRDKLDGNELDLSLSDLNEVPVKELAALPKATILDLSCNKLTTLPSDFCGLTHLVKLDLSKNKLQQLPADFGRLVNLQHLDLLNNKLVTLPVSFAQLKNLKWLDLKDNPLDPVLAKVAGDCLDEKQCKQCANKVLQHMKAVQADQERERQRRLEVEREAEKKREAKQRAKEAQERELRKREKAE--EKERRRK 201
The following BLAST results are available for this feature:
BLAST of TCONS_00063679-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LRC599.958e-4544.04Leucine-rich repeat-containing protein 59 OS=Homo ... [more]
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