TCONS_00063805-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00063805-protein
Unique NameTCONS_00063805-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length218

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00063805-protein ID=TCONS_00063805-protein|Name=TCONS_00063805-protein|organism=Clytia hemisphaerica|type=polypeptide|length=218bp
MGGNSSKQSSSRATALEIYDSNVASLARRFDKSDFSSPEALVKHLQPGDL
VQVKGRYIWQWFYSHFAVYIGNGNIVHINKPGDKKQGGKVWVERRDMVTE
FMGKDVRKNNTMDGSFNARRVQDIVKEAKSYVGEKWDYSFLYNNCEHFAS
MCRYGRKISLQSLSMVDVYRNDLSLGEYIQYHFKSAKSKCGTLISWVKRK
VISAASIMANAAQLAIGY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_039999XLOC_039999Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00063805TCONS_00063805Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007053LRAT-like_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007053LRAT-like domainPFAMPF04970LRATcoord: 44..157
e-value: 5.1E-20
score: 72.0
NoneNo IPR availableGENE3D3.90.1720.10coord: 42..197
e-value: 1.2E-6
score: 28.0
NoneNo IPR availableSUPERFAMILY54001Cysteine proteinasescoord: 44..144

Blast
[Close]
BLAST of TCONS_00063805-protein vs. Swiss-Prot (Human)
Match: HRSL4 (Retinoic acid receptor responder protein 3 OS=Homo sapiens GN=RARRES3 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.089e-18
Identity = 40/121 (33.06%), Postives = 63/121 (52.07%), Query Frame = 0 
Query:   46 QPGDLVQVKGRYIWQWFYSHFAVYIGNGNIVHINKPGDKKQGGK----------VWVERRDMVTEFMGKDVRKNNTMDGSFNARRVQDIVKEAKSYVGEKWDYSFLYNNCEHFASMCRYGR 156
            +PGDL++     I++  Y H+A+YIG+G ++H+  P +    G             V+R  +     G   R NN++D  +  R V+ I+  AK  VG+K  YS +  NCEHF +  RYG+
Sbjct:    9 KPGDLIE-----IFRLGYEHWALYIGDGYVIHLAPPSEYPGAGSSSVFSVLSNSAEVKRERLEDVVGGCCYRVNNSLDHEYQPRPVEVIISSAKEMVGQKMKYSIVSRNCEHFVTQLRYGK 124
The following BLAST results are available for this feature:
BLAST of TCONS_00063805-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HRSL43.089e-1833.06Retinoic acid receptor responder protein 3 OS=Homo... [more]
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