TCONS_00063831-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00063831-protein
Unique Name	TCONS_00063831-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	469

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00063831-protein ID=TCONS_00063831-protein|Name=TCONS_00063831-protein|organism=Clytia hemisphaerica|type=polypeptide|length=469bp
LFHSRENSKMITEELFFIYDSEAMQTEYDTIEESLLFHQPKFVAQEEEFV
LLVGQLVGIVVFSNDLAGNIPSILRLEKMKFSVKKINSYLIFLGCSRCDM
SDHVLKIQLQNFIEIFNFYHRSFDHVKNACGDDSNNFRKELAKICQCYLP
HAKNYNSSWNSIFSPIPSVELNKVSYVILMKVNEILESCQRRQNVLCGAL
FSEERLVSTQISHEILFNLTLIKPGQKNLPAERFNPGFECPYGVNFYKVF
VTKKQYESLVHSANTSPYKRNTEEQLQVTSRKRITKLPLAFSNKNTSSES
LQSLNSRESLLSEHSFDSNSLNDSMESIQSTHETEEQQTSQNAPTEDIWK
DGMREIHIYVQGHSSTLLVLFMEQKKKYSEKKIKSLWGMLLPQLGDLEAQ
VKSLVSNESEKDGVDLERINYVQYDKLKHTVKSNMGEPVKVRDYNTIDGV
RCIHHQFQQSSSLRSITLR

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_040021	XLOC_040021	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00063831	TCONS_00063831	Clytia hemisphaerica	transcript

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 315..343

Blast

[Close]

BLAST of TCONS_00063831-protein vs. Swiss-Prot (Human)
Match: HPS4 (Hermansky-Pudlak syndrome 4 protein OS=Homo sapiens GN=HPS4 PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 5.878e-24
Identity = 71/251 (28.29%), Postives = 123/251 (49.00%), Query Frame = 0

Query:   16 FFIYDSEAMQTEYDTIEESLLFHQPK--FVAQEEEFVLLVGQLVGIVVFSNDLAGNIPSILRLEKMKFSVKKINSYLIFLGCSRCDMSDHVLKIQLQNFIEIFNFYHRSFDHVKNACGDDSNNFRKELAKICQCYLPHAKNYNSSWNSIFSPIPSVELNKVSYVILMKVNEILESCQRRQNVLCGALFSEERLVSTQISHEILFNLTL--IKPGQKNLPAERFNP---GFECPYGVNFYKVFVTKKQYESL 259
            FF+YD   ++ E D     + +  P    + Q+E   LL GQ+ G+V   +D++ + P+++RL K+KF++K    YL  LGC+  ++ D   K  L   +  FNFY+         C       ++EL+     ++       S  + IF+ + +++  KV  ++L+K   IL++CQR  ++L G +  +  +VSTQ+   +   + L    P ++ LP     P   G   P  V    VFVTK++  SL
Sbjct:   18 FFLYDGSKVKEEGDPTRAGICYFYPSQTLLDQQE---LLCGQIAGVVRCVSDISDSPPTLVRLRKLKFAIKVDGDYLWVLGCA-VELPDVSCKRFLDQLVGFFNFYNGPVSLAYENCS------QEELSTEWDTFIEQILKNTSDLHKIFNSLWNLDQTKVEPLLLLKAARILQTCQRSPHILAGCILYKGLIVSTQLPPSLTAKVLLHRTAPQEQRLPTGEDAPQEHGAALPPNVQIIPVFVTKEEAISL 258

The following BLAST results are available for this feature:

BLAST of TCONS_00063831-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00063831-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
HPS4	5.878e-24	28.29	Hermansky-Pudlak syndrome 4 protein OS=Homo sapien...	[more]

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TCONS_00063831-protein (polypeptide) - C. hemisphaerica