TCONS_00063950-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00063950-protein
Unique NameTCONS_00063950-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length285

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00063950-protein ID=TCONS_00063950-protein|Name=TCONS_00063950-protein|organism=Clytia hemisphaerica|type=polypeptide|length=285bp
MRYPYSLLKAIFGLFIITCCYEQKALSFTYRRTGNQHQLLPDSTDDTLTA
NLDIDTSEDLSSTSFIKKIDSNIQELEKDTSTKDLDLKAMENLDKTDEST
NQRNTRHNTGKDQNTQGMSTKKTRVNKADRVVPSTVHAILNAPTNTMRAY
LRSKTGLYLRMGPNGELGGTRKMKDKHVIFVIERMSKDAVRLKGEAANKY
ICINKRRKLFTREKPNSKCLLRSYLEENHYELFWSYMYSKKTDGENGWFL
ALKRNGKIRKPANTKIGDRQTMFFVHRADDIPSGS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_040078XLOC_040078Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00063950TCONS_00063950Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002209Fibroblast_GF_fam
IPR008996IL1/FGF
Vocabulary: Molecular Function
TermDefinition
GO:0008083growth factor activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008083 growth factor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002209Fibroblast growth factor familySMARTSM00442FGF_2coord: 145..277
e-value: 1.1E-10
score: 51.5
IPR002209Fibroblast growth factor familyPFAMPF00167FGFcoord: 151..273
e-value: 2.1E-25
score: 89.1
NoneNo IPR availableGENE3D2.80.10.50coord: 138..280
e-value: 1.9E-26
score: 91.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 92..125
IPR008996Cytokine IL1/FGFSUPERFAMILY50353Cytokinecoord: 142..276

Blast
[Close]
BLAST of TCONS_00063950-protein vs. Swiss-Prot (Human)
Match: FGF1 (Fibroblast growth factor 1 OS=Homo sapiens GN=FGF1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.254e-16
Identity = 38/122 (31.15%), Postives = 60/122 (49.18%), Query Frame = 0 
Query:  153 SKTGLYLRMGPNGELGGTRKMKDKHVIFVIERMSKDAVRLKGEAANKYICINKRRKLFTREKPNSKCLLRSYLEENHYELFWSYMYSKKTDGENGWFLALKRNGKIRKPANTKIGDRQTMFF 274
            S  G +LR+ P+G + GTR   D+H+   +   S   V +K     +Y+ ++    L+  + PN +CL    LEENHY  + S     K   E  WF+ LK+NG  ++   T  G +  +F 
Sbjct:   32 SNGGHFLRILPDGTVDGTRDRSDQHIQLQLSAESVGEVYIKSTETGQYLAMDTDGLLYGSQTPNEECLFLERLEENHYNTYIS-----KKHAEKNWFVGLKKNGSCKRGPRTHYGQKAILFL 148
The following BLAST results are available for this feature:
BLAST of TCONS_00063950-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FGF11.254e-1631.15Fibroblast growth factor 1 OS=Homo sapiens GN=FGF1... [more]
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