TCONS_00064021-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00064021-protein
Unique NameTCONS_00064021-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1551

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00064021-protein ID=TCONS_00064021-protein|Name=TCONS_00064021-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1551bp
MDMLNVLLKLHHDLLRMLNSEHHLIIFGLIAYFLRYTCANNCYDFSNKPR
TCITSPINAAQNREIVASNTCGTPTAEGFCYIGPQKNCEICNAAVPQLAH
PAELMVDRFMLNNGVTWWQSMTWWTSNQLDLSKLFVPLKVNITLDLKKMY
LISGGIYVTFKTERPKQMIIEKSRDFGKTWQVYQYFAKNCRSMYNLQPDP
SINGNXQYFAKNCRSMYNLQPDPSIDGNSPFKDTCSELYSGEFPRSGGVV
HFDPRLRYQPQDYYHADVHRYLEATNIRLRLEYPGTDGREYINEETTLNQ
YYYAISDLRVDARCDCNGHGEFCDIGSDGQEKCDCHHFTQGVDCGECKPL
YRNRLWMAGNATNANPCQKCECFGHATACTYSAFLNQGMCSNCQDNTRGI
RCDQCVERFYRNISVTLNDPKVCIPCDCYAPGIMDDGKCLQSATMNQVLG
QCTCKPGIYGRRCDECIPGKWGFANPPIGTCFDCSCNIFGTINRNQICDQ
NSGQCTCKVSTTGRVCDSCKDGYYKFPTSLSNECELCPCNEGGAHPSCNK
LTGICQCRIGVMGAQCDLIKPGYFFPNFTYLKFEPEFSNANGSFSWYYLV
RNYAKYFTGFGYAKLEAGQEISFDIMVAVETKYFMLLRYSLYQLEWFSQI
LPQGREISDWSGGTDKDFYLKSSDQPMQWLFSVTIYDSGGQLAHAHTFTV
QDLTIGNAQFMLSKTSFELKANVKYTLRIVYEDSSKSYGQPWPLLLDSVS
FMLDYTVSQYFQGLTISKKLEVFNCFSGSKDLSTTYNLPNACEVPTFTID
LQIYKKALTCNCFTAGSHLWNTCDQYGGQCQCREGYGDRACDQCLPGYYG
DPGVGCLKCACSTVGSLSLACNRQSGQCTCKENAHGLKCDECLLGYYYLS
ETNPKGCLECFGYGHLSSCSSAVGFVRSYISTIFMGGASFSGWLLMSQNG
QNDLTSTLLRTSVGMEHTVEMNVQSYFMAPIRYLGDQLYTYGQMLVVDMS
LYPIQLELAKDVHWHVRLVGNGQTALFKFVQTLVRGHTVYTVRLHQDYMV
NSTKLTEFQFKAMLGQLTALHIGTLYFNAPYTMTIHEISLHTATYQPTNM
NMTLRVNYVERANCLKGYAGFSCEKCADGYTRVIPGGGPLVNCVPCSCNN
RSTQCDPTSGVCRNCRPGTTGSYCEKCLANVQAPGCDRCTDGYYGMYTMV
SGCKQCDCHLPGTAGGNNNICHSFSGQCVCNQTLNVGGRQCSSCKENAYN
VSLTEDLRCQECPTCYGLIEDYILEKRAHILHTHMELVKIMSLLSGTQIT
PFYQEITALRSQISNMTSKAVSLKTKVDGLDMLWGTLGQKITLFMQTLDK
TLLLKMDTMTDCGNQIIVIHNQTMFRYYEIHQLLINDFLLLKNTVHARMQ
QQHEALEMLRRLGTEMKGYLDTATSAASSAMTRKYDFMQKIRLSYEAAQT
AVQSATRIRSEAFNLTSRLTPVNARAIEVKVYAQGCVGSIDAWLKNATST
LVYAQGVLRMIEITLPDNSQMIDGLENNLSKLTTTYSTTASNFITLSRDV
X
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_040145XLOC_040145Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00064021TCONS_00064021Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000034Laminin_IV
IPR000742EGF-like_dom
IPR002049Laminin_EGF
IPR008211Laminin_N
IPR008979Galactose-bd-like
IPR013015Laminin_IV_B
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00011EGFLAMININcoord: 842..870
score: 30.56
coord: 498..516
score: 46.89
coord: 823..841
score: 45.93
coord: 871..889
score: 44.98
NoneNo IPR availableGENE3D2.10.25.10coord: 371..425
e-value: 7.1E-9
score: 35.3
coord: 911..1144
e-value: 7.8E-8
score: 32.0
coord: 314..370
e-value: 1.1E-6
score: 28.3
coord: 860..910
e-value: 1.8E-8
score: 34.0
NoneNo IPR availableGENE3D2.10.25.10coord: 426..483
e-value: 2.3E-8
score: 33.8
coord: 484..535
e-value: 2.7E-10
score: 39.9
coord: 1205..1262
e-value: 5.2E-4
score: 19.8
coord: 536..578
e-value: 2.0E-6
score: 27.5
NoneNo IPR availableGENE3D2.10.25.10coord: 809..859
e-value: 1.2E-7
score: 31.5
coord: 1145..1178
e-value: 3.6E-6
score: 26.7
coord: 1179..1204
e-value: 0.05
score: 13.5
NoneNo IPR availableCDDcd00055EGF_Lamcoord: 313..368
e-value: 4.63003E-5
score: 41.9562
NoneNo IPR availableCDDcd00055EGF_Lamcoord: 537..576
e-value: 1.20535E-6
score: 46.5786
NoneNo IPR availableCDDcd00055EGF_Lamcoord: 425..479
e-value: 1.16087E-6
score: 46.5786
NoneNo IPR availableCDDcd00055EGF_Lamcoord: 859..907
e-value: 2.26678E-10
score: 57.3642
NoneNo IPR availableCDDcd00055EGF_Lamcoord: 1206..1250
e-value: 1.13255E-5
score: 43.8822
NoneNo IPR availableCDDcd00055EGF_Lamcoord: 810..855
e-value: 4.12894E-10
score: 56.5938
NoneNo IPR availableCDDcd00055EGF_Lamcoord: 1145..1204
e-value: 9.28554E-8
score: 50.0454
NoneNo IPR availableCDDcd00055EGF_Lamcoord: 484..535
e-value: 1.93127E-8
score: 51.9714
NoneNo IPR availableSUPERFAMILY57196EGF/Laminincoord: 810..853
NoneNo IPR availableSUPERFAMILY57196EGF/Laminincoord: 537..577
NoneNo IPR availableSUPERFAMILY57196EGF/Laminincoord: 859..907
NoneNo IPR availableSUPERFAMILY57196EGF/Laminincoord: 484..534
NoneNo IPR availableSUPERFAMILY57196EGF/Laminincoord: 426..476
NoneNo IPR availableSUPERFAMILY57196EGF/Laminincoord: 314..372
NoneNo IPR availableSUPERFAMILY57196EGF/Laminincoord: 370..412
IPR000034Laminin IVSMARTSM00281LamB_3acoord: 971..1095
e-value: 4.2E-4
score: 4.9
IPR000034Laminin IVPFAMPF00052Laminin_Bcoord: 976..1098
e-value: 7.5E-14
score: 51.7
IPR000034Laminin IVPROSITEPS51115LAMININ_IVAcoord: 938..1111
score: 16.266
IPR000742EGF-like domainSMARTSM00181egf_5coord: 366..403
e-value: 230.0
score: 0.4
coord: 860..908
e-value: 190.0
score: 1.3
coord: 533..567
e-value: 29.0
score: 10.7
coord: 1207..1260
e-value: 230.0
score: 0.4
coord: 1142..1175
e-value: 50.0
score: 8.0
coord: 811..857
e-value: 64.0
score: 6.7
IPR002049Laminin EGF domainSMARTSM00180lamegf_3coord: 484..534
e-value: 4.9E-9
score: 46.0
coord: 426..481
e-value: 7.6E-9
score: 45.4
coord: 1206..1262
e-value: 0.0046
score: 26.2
coord: 370..423
e-value: 1.5E-6
score: 37.8
coord: 859..907
e-value: 8.7E-12
score: 55.2
coord: 1146..1186
e-value: 1.6E-7
score: 41.0
coord: 537..578
e-value: 1.9E-5
score: 34.1
coord: 810..856
e-value: 3.7E-10
score: 49.7
coord: 314..367
e-value: 0.075
score: 22.2
IPR002049Laminin EGF domainPFAMPF00053Laminin_EGFcoord: 484..534
e-value: 8.2E-9
score: 35.4
coord: 314..356
e-value: 4.9E-4
score: 20.1
coord: 537..574
e-value: 5.9E-7
score: 29.4
coord: 859..907
e-value: 4.3E-10
score: 39.5
coord: 370..418
e-value: 9.8E-5
score: 22.3
coord: 810..856
e-value: 2.2E-7
score: 30.8
coord: 1146..1179
e-value: 5.8E-6
score: 26.3
coord: 1206..1259
e-value: 0.029
score: 14.4
coord: 426..478
e-value: 9.7E-7
score: 28.7
IPR002049Laminin EGF domainPROSITEPS01248EGF_LAM_1coord: 505..539
IPR002049Laminin EGF domainPROSITEPS50027EGF_LAM_2coord: 426..483
score: 11.169
IPR002049Laminin EGF domainPROSITEPS50027EGF_LAM_2coord: 537..582
score: 10.274
IPR002049Laminin EGF domainPROSITEPS50027EGF_LAM_2coord: 484..536
score: 16.634
IPR002049Laminin EGF domainPROSITEPS50027EGF_LAM_2coord: 859..909
score: 17.814
IPR002049Laminin EGF domainPROSITEPS50027EGF_LAM_2coord: 1206..1261
score: 8.865
IPR002049Laminin EGF domainPROSITEPS50027EGF_LAM_2coord: 810..858
score: 16.672
IPR002049Laminin EGF domainPROSITEPS50027EGF_LAM_2coord: 370..425
score: 8.884
IPR002049Laminin EGF domainPROSITEPS50027EGF_LAM_2coord: 314..369
score: 7.056
IPR002049Laminin EGF domainPROSITEPS50027EGF_LAM_2coord: 1146..1205
score: 12.349
IPR008211Laminin, N-terminalSMARTSM00136LamNT_2coord: 46..312
e-value: 2.3E-28
score: 110.2
IPR008211Laminin, N-terminalPFAMPF00055Laminin_Ncoord: 52..199
e-value: 9.8E-40
score: 136.5
coord: 207..311
e-value: 1.6E-15
score: 57.3
IPR008211Laminin, N-terminalPROSITEPS51117LAMININ_NTERcoord: 48..313
score: 33.271
IPR008979Galactose-binding domain-likeGENE3D2.60.120.260coord: 57..310
e-value: 1.1E-12
score: 47.7
IPR013015Laminin IV type BPROSITEPS51116LAMININ_IVBcoord: 575..804
score: 10.193

Blast
BLAST of TCONS_00064021-protein vs. Swiss-Prot (Human)
Match: LAMB2 (Laminin subunit beta-2 OS=Homo sapiens GN=LAMB2 PE=1 SV=2)

HSP 1 Score: 353.599 bits (906), Expect = 2.355e-99
Identity = 270/909 (29.70%), Postives = 399/909 (43.89%), Query Frame = 0
Query:   65 IVASNTCGTPTAEGFC---YIGPQKNCEICNAAVPQLA------HPAELMVDRFMLNNGVTWWQSMTWWTSNQLDLSKLFVPLKVNITLDLKKMYLISGGIYVTFKTERPKQMIIEKSRDFGKTWQVYQYFAKNCRSMYNLQPDPSINGNXQYFAKNCRSMYNLQPDPSIDGNSPFKDTCSELYSGEFPRSGGVVHFDPRLRYQPQDYYHADVHRYLEATNIRLRLEYPGTDGREYINEETTLNQ-YYYAISDLRVDARCDCNGHGEFCDIGSDGQE--------KCDCHHFTQGVDCGECKPLYRNRLWMAGNATNANPCQKCECFGHATACTY-------SAFLNQGMCSNCQDNTRGIRCDQCVERFYRNISVTLNDPKVCIPCDCYAPGIMDDGKC--LQSATMNQVLGQCTCKPGIYGRRCDECIPGKWGFANPPIGTCFDCSCNIFGTINRNQICDQNSGQCTCKVSTTGRVCDSCKDGYYKFPTSLSNECELCPCNEGGA-HPSCNKLTGICQCRIGVMGAQCDLIKPGYFFPNFTYLKFEPEFSNANGSFSWYYLVR-NYAKYFTGFGYAKLEAGQEISFDIM-VAVETKYFMLLRYSLYQLEWFSQILPQGREISDWSGGTDKDFYLKSSDQPMQWL-FSVTIYDSGGQLAHA---HTFTVQDLTIG----NAQFMLSKTSFELKANVKYT--LRIVYEDSSKSYGQPWP---LLLDSVSFMLDYTVSQYFQG-----LTISKKLEVFNCFSGSKDLSTTYNLPN-ACEVPTFTIDLQIYKKALTCNCFTAGSHLWNTCDQYGGQCQCREGYGDRACDQCLPGYYGDPGVGCLKCACSTVGSLSLACNRQSGQCTCKENAHGLKCDECLLGYYYLSETNPKGCLECFGYGHLSSCSSAVG 924
            + AS+TCG    + +C   ++  +K C +C++  P  A      H  + +V  F       WWQS               +P  V I LDL+  +  +  + +TFKT RP  M++E+S DFG+TW VY+YF+ +C + +   P   +     +    C S Y+ + +PS +G   ++                    DP +     D Y + +   L+ TN+R+ L    T G   ++    + + YYYA+ +L V   C C GH   C                 C C H T+G++C +C+  YR+  W      +++ C+KCEC GH  +C +       S  ++ G+C  CQ NT G  C+ C   FYR+ +  L DP VC  CDC   G  D G+C       +  V GQC CK  + G RC +C  G +G +      C  C CN  GT+  +  CD NSG C CK   TGR CD C  G++     L   C  C C+ GGA  P C++ TG C CR  ++G +C+ ++PGYF P   +L +E E +          LV       +TG G+ +L+ GQ + F +  V     Y +LLR           + PQ                      P QW    + +   G   AH+   H     D   G    +A++++      L+  + Y   L++V    S     P+    LL+DS+  +    V + F G     L      E + C    + L  +   P+ AC     ++   IY  AL C C   GS L + C+ +GGQC C+ G   R CD C PGYYG    GC  C CS  G+LS  C + SGQC C+  A GL+CD C  G +      P     C   GH   C++  G
Sbjct:   62 LTASSTCGLNGPQPYCIVSHLQDEKKCFLCDSRRPFSARDNPHSHRIQNVVTSFAPQRRAAWWQSENG------------IP-AVTIQLDLEAEFHFTH-LIMTFKTFRPAAMLVERSADFGRTWHVYRYFSYDCGADF---PGVPLAPPRHWDDVVCESRYS-EIEPSTEGEVIYRV------------------LDPAIPIP--DPYSSRIQNLLKITNLRVNLTRLHTLGDNLLDPRREIREKYYYALYELVVRGNCFCYGHASECAPAPGAPAHAEGMVHGACICKHNTRGLNCEQCQDFYRDLPWRPAEDGHSHACRKCECHGHTHSCHFDMAVYLASGNVSGGVCDGCQHNTAGRHCELCRPFFYRDPTKDLRDPAVCRSCDCDPMGSQDGGRCDSHDDPALGLVSGQCRCKEHVVGTRCQQCRDGFFGLSISDRLGCRRCQCNARGTVPGSTPCDPNSGSCYCKRLVTGRGCDRCLPGHWGLSHDLLG-CRPCDCDVGGALDPQCDEGTGQCHCRQHMVGRRCEQVQPGYFRPFLDHLIWEAEDTRGQVLDVVERLVTPGETPSWTGSGFVRLQEGQTLEFLVASVPKAMDYDLLLR-----------LEPQ---------------------VPEQWAELELIVQRPGPVPAHSLCGHLVPKDDRIQGTLQPHARYLIFPNPVCLEPGISYKLHLKLVRTGGSAQPETPYSGPGLLIDSLVLLPRVLVLEMFSGGDAAALERQATFERYQCH--EEGLVPSKTSPSEACAPLLISLSTLIYNGALPCQCNPQGS-LSSECNPHGGQCLCKPGVVGRRCDLCAPGYYGFGPTGCQACQCSHEGALSSLCEKTSGQCLCRTGAFGLRCDRCQRGQWGFPSCRP-----CVCNGHADECNTHTG 891          

HSP 2 Score: 90.5077 bits (223), Expect = 5.130e-18
Identity = 69/226 (30.53%), Postives = 96/226 (42.48%), Query Frame = 0
Query:  367 CQKCECFGHATACTYSAFLNQGMCSNCQDNTRGIRCDQCVERFYRNISVTLNDPKV-----CIPCDC-YAPGIMDD--GKCLQSATMNQVLGQCTCKPGIYGRRCDECIPGKWGFANPPIGTCFDCSCNIFGTINRNQICDQNSGQC-TCKVSTTGRVCDSCKDGYYKFPTSLSNECELCPCNEGGAHPS---------CNKLTGICQCRIGVMGAQCDLIKPGYF 574
            C+ C C GHA  C      + G C  C+D+T G  C++C+  F+        DP++     C PC C   PG        C Q     Q++  C C+ G  G RC+ C PG +G  + P G C  C C+          CD ++GQC  C   T G  C  CK G++    +    C  C CN  G +P          C+  +G C C   V G  CD   P ++
Sbjct:  874 CRPCVCNGHADECN----THTGACLGCRDHTGGEHCERCIAGFH-------GDPRLPYGGQCRPCPCPEGPGSQRHFATSCHQDEYSQQIV--CHCRAGYTGLRCEACAPGHFGDPSRPGGRCQLCECSGNIDPMDPDACDPHTGQCLRCLHHTEGPHCAHCKPGFHG--QAARQSCHRCTCNLLGTNPQQCPSPDQCHCDPSSGQCPCLPNVQGPSCDRCAPNFW 1084          

HSP 3 Score: 88.9669 bits (219), Expect = 1.523e-17
Identity = 59/159 (37.11%), Postives = 76/159 (47.80%), Query Frame = 0
Query:  424 IPCDCYAPGIMDDGKCLQSATMNQVLGQCTCKPGIYGRRCDECIPGKWGFANPPIGTCFDCSCNIFGTINRNQICDQNSGQCTCKVSTTGRVCDSCKDGYYKFPTSLSNECELCPCNEGGAHPSCNKLTGIC-QCRIGVMGAQCDLIKPGYFF-PNFTY 580
            +PC C   G +       S+  N   GQC CKPG+ GRRCD C PG +GF   P G C  C C+  G +  + +C++ SGQC C+    G  CD C+ G + FP+     C  C CN  G    CN  TG C  CR    G  C+    G+   P   Y
Sbjct:  781 LPCQCNPQGSL-------SSECNPHGGQCLCKPGVVGRRCDLCAPGYYGFG--PTG-CQACQCSHEGAL--SSLCEKTSGQCLCRTGAFGLRCDRCQRGQWGFPS-----CRPCVCN--GHADECNTHTGACLGCRDHTGGEHCERCIAGFHGDPRLPY 920          

HSP 4 Score: 84.7297 bits (208), Expect = 2.941e-16
Identity = 72/255 (28.24%), Postives = 101/255 (39.61%), Query Frame = 0
Query:  333 CDCHHFTQGVDCGECKPLYRNRLWMAGNATNANPCQKCECFGHATACTYSAF-LNQGMCSNCQDNTRGIRCDQCVERFYRNISVTLNDPKVCIPCDCYAPGI-------MDDGKCLQSATMNQVLGQCTCKPGIYGRRCDECIPGKWGFANPPIGTCFDCSCNIFGTINRNQICDQNSGQCTCKVSTTGRVCDSCKDGYYKFPTSLSNECELCPCNEGGAH-PSCNKLTGICQCRIGVMGAQCDLIKPGY--FFP 576
            C C     G+ C  C P +         +     CQ CEC G+       A   + G C  C  +T G  C  C   F+   +      + C  C C   G         D   C  S+      GQC C P + G  CD C P  W   +     C  C+C+   +  R   C++ +GQC C+    GR C  C++ ++  P     +C  C C+  G   P C++ TG C CR GV G +CD    G+   FP
Sbjct:  954 CHCRAGYTGLRCEACAPGH-----FGDPSRPGGRCQLCECSGNIDPMDPDACDPHTGQCLRCLHHTEGPHCAHCKPGFHGQAAR-----QSCHRCTCNLLGTNPQQCPSPDQCHCDPSS------GQCPCLPNVQGPSCDRCAPNFWNLTS--GHGCQPCACHP--SRARGPTCNEFTGQCHCRAGFGGRTCSECQELHWGDP---GLQCHACDCDSRGIDTPQCHRFTGHCSCRPGVSGVRCDQCARGFSGIFP 1185          
The following BLAST results are available for this feature:
BLAST of TCONS_00064021-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LAMB22.355e-9929.70Laminin subunit beta-2 OS=Homo sapiens GN=LAMB2 PE... [more]
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