TCONS_00064352-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00064352-protein
Unique NameTCONS_00064352-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length438

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00064352-protein ID=TCONS_00064352-protein|Name=TCONS_00064352-protein|organism=Clytia hemisphaerica|type=polypeptide|length=438bp
RNFLSPGLAPFTFLFTRRVRGAVEIEGESSFDFSFKTLKMSTTDAAEAIT
TTTDTEGVAEEEQLCPVLAANSSPNLFRLSLPEWLKEQVDSGKHKGVYWI
DRKEKIFHVPWKHASRNGWEDGDVSLFKAWAIYTNRYREGVDKARPALWK
TNFRCAINSHSSITFLKDQGQRKGDKAHRIMQLVEAPKKGRRPLNSNEVT
TDNDSPRKLVRLTYPNFGPPPPDGVPIERGRYKKAAEKAAAAKAKAQSKI
CNGCAFIRIQMQDALKIYEDLHNEEEENVDFQSLKEMFSALNNTNEHLCH
NEDLKELMEKNLIATKENPEELPKPNLQDLYFIGKALQSAERNETLKVAI
KVESTEQMEIVDSTYDTTENDTDIIHIVTMSEDQALEKTMTGTEPEEKDE
SFEAKEQQDDEVEVQDAAAIEVIDQDPEDEEDLITPRN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_040351XLOC_040351Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00064352TCONS_00064352Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001346Interferon_reg_fact_DNA-bd_dom
IPR011991WHTH_DNA-bd_dom
IPR019817Interferon_reg_fac_CS
Vocabulary: Molecular Function
TermDefinition
GO:0000975regulatory region DNA binding
GO:0003700transcription factor activity, sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0000975 regulatory region DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 258..278
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 388..412
NoneNo IPR availableCDDcd00103IRFcoord: 78..184
e-value: 1.98233E-32
score: 117.777
IPR001346Interferon regulatory factor DNA-binding domainPRINTSPR00267INTFRNREGFCTcoord: 80..99
score: 40.17
coord: 123..140
score: 48.08
coord: 106..119
score: 51.23
coord: 146..168
score: 47.08
IPR001346Interferon regulatory factor DNA-binding domainSMARTSM00348irfvirus2coord: 74..186
e-value: 1.2E-31
score: 121.1
IPR001346Interferon regulatory factor DNA-binding domainPFAMPF00605IRFcoord: 81..183
e-value: 2.8E-34
score: 117.5
IPR001346Interferon regulatory factor DNA-binding domainPROSITEPS51507IRF_2coord: 78..185
score: 32.144
IPR011991Winged helix-turn-helix DNA-binding domainGENE3D1.10.10.10coord: 75..185
e-value: 2.1E-35
score: 120.6
IPR011991Winged helix-turn-helix DNA-binding domainSUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 78..184
IPR019817Interferon regulatory factor, conserved sitePROSITEPS00601IRF_1coord: 99..131

Blast
[Close]
BLAST of TCONS_00064352-protein vs. Swiss-Prot (Human)
Match: IRF1 (Interferon regulatory factor 1 OS=Homo sapiens GN=IRF1 PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 2.849e-28
Identity = 48/118 (40.68%), Postives = 78/118 (66.10%), Query Frame = 0 
Query:   76 LFRLSLPEWLKEQVDSGKHKGVYWIDRKEKIFHVPWKHASRNGWE-DGDVSLFKAWAIYTNRYREGVDKARPALWKTNFRCAINSHSSITFLKDQGQRKGDKAHRIMQLVEAPKKGRR 192
            + R+ +  WL+ Q++S +  G+ WI+++E IF +PWKHA+++GW+ + D  LF++WAI+T RY+ G  +  P  WK NFRCA+NS   I  +KDQ + KG  A R+ +++    K +R
Sbjct:    3 ITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAIHTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTKNQR 120
The following BLAST results are available for this feature:
BLAST of TCONS_00064352-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IRF12.849e-2840.68Interferon regulatory factor 1 OS=Homo sapiens GN=... [more]
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