TCONS_00064367-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00064367-protein
Unique Name	TCONS_00064367-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1006

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00064367-protein ID=TCONS_00064367-protein|Name=TCONS_00064367-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1006bp
MSSSRSKGSSHQEDSEMTSMELRSKLFHSFRNKGMLQSVKSQLRNRLALE
LQAKLHSDGQPKETNQSNHTLVQQISNHLVLNHLHYSKYDYSLSVFLSES
STNSEKKWSVYDLLQMLNVHPESLLYQRLIQSCDDQISQESFLYSFLRQL
STGLSHSNTDCSTQTEEVVSTLEYKLREVEMALQKKSHLRESGSLEAKLL
EHQKRYELQKKKEFKIEMDRFKSTQLSMMRLEEREKHDKQLNKMKEHYEA
TYKKQLVNLENKEKDWERSRHEQRQNAEKEAYDKRQKVLSDLQRLKDREN
QLEKNNELALKSLNMEEENLRSRREQLKYKEESMKDLERRYEERLQNEII
KMKYDLQMVERNQHEKLQKQELKFKEDKVNFEAQKDLHLGWKKEAEKFRS
LVEEKQYELLASKETIGSMSNKIAILTERCQKLTNYEEVCNLNKLLERDM
ALLQRNFDNVNMEKAQKEKEHQKRMKDLMKKISRTEELEKVKDHNADGFF
REKYYSMQDKYQVEVAKNEDLKKLNEELLLSQRETLREVDELRVALSLAR
QEKDKLQRLQAQQKVSKARQNTNPSSRNHQKTPIKRPSWTEDDIIHYHSN
NKENRFPQQPEEQKSESEEDVLEKLEREAKCLEQSYNDFKERQKQEAKST
SRVHFDPFVQRRSTSTFNSTDITRTLEIRDESSIKPSNKITTTHNSGNGT
LLPLSSTQTPGGQSAVEGGGGAPSFGLSLVPQQSQPRHDRSRVTRTVNET
TDQRPVTIATCQSLTQHPLTDTTNIHTQHIYDTRTNLTQYPLGDTEINTI
FEQSEPEQDEQTDVSAESSKHTDQSKVIASTTVPNKTTSVEREYGLKETS
IETFDSPDKRVHPQEEDVFFTPAKGLVLGLQETPERDEVKSDISSSKDDG
GSMKEKDLLRTESVTEDSSVKSLSINDDHGEHEEEKKEENNVMDHYLQMV
IQQKNKSTTNDLSATHDEKKQEEKGNDGYEDDFDIPLSNDEDEVRLDDAS
TSEYEW

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_040358	XLOC_040358	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00064367	TCONS_00064367	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006594	LisH

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 285..362
None	No IPR available	COILS	Coil	Coil	coord: 615..642
None	No IPR available	COILS	Coil	Coil	coord: 436..488
None	No IPR available	COILS	Coil	Coil	coord: 539..569
None	No IPR available	COILS	Coil	Coil	coord: 245..276
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 678..748
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 848..867
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 557..622
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 804..828
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 263..285
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 879..1006
IPR006594	LIS1 homology motif	PROSITE	PS50896	LISH	coord: 72..104 score: 7.692

Blast

[Close]

BLAST of TCONS_00064367-protein vs. Swiss-Prot (Human)
Match: OFD1 (Oral-facial-digital syndrome 1 protein OS=Homo sapiens GN=OFD1 PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.093e-36
Identity = 125/425 (29.41%), Postives = 238/425 (56.00%), Query Frame = 0

Query:   21 ELRSKLFHSFRNKGMLQSVKSQLRNRLALEL-QAKLHSDGQPKETNQSNHTLVQQISNHLVLNHLHYSKYDYSLSVFLSESSTNSEKKWSVYDLLQMLNVHPESLLYQRLIQSCDDQISQESFLYSFLRQLSTGLSHSNTDCS--TQTEEVVS--TLEYKLREVEMALQKKSHLR-ESGSLEAKLLEHQKRYELQKKKEFKIEMDRFKSTQLSMMRLEEREKHDKQLNKMKEHYEATYKKQLVNLENKEKDWERSRHEQRQNAEKEAYDKRQKVLSDLQRLKDRENQLEKNNELALKSLNMEEENLRSRREQLKYKEESMKDLERRYEERLQNEIIKMKYDLQ---MVERNQHEKLQKQELKFKEDKVNFEAQKDLHLGWKKEAEKFRSLVEEKQYELLASKETIGSMSNKIAILTERCQKLTNY 436
            ELR KL+ +F+++G+L ++K+QLRN+L  EL    L  + QP+  +    +L+   SN LV +HL    Y+YSLSVF  ES    EK +++ DLLQ++ ++P S LY+ L+   D + +Q+ FL  FL++L+     +   C+  TQT    +  +L  KL+ ++         R +  SLE KL E+++  E Q + E   ++  FK T+++ +++E ++K++K+L   +  +E   + +   L  +EK      H+ ++   KE Y +RQ +L D+  L+ RE +L++  E    +  ++EE  +S  E L+ +E+++K  E  Y+ +L+NE++K + +L+   ++  N   +L + E K KE  V+ + +       K+E  +  + V+E + EL + K    +++ +  +L E+ +++++Y
Sbjct:   18 ELRKKLYQTFKDRGILDTLKTQLRNQLIHELMHPVLSGELQPRSISVEGSSLLIGASNSLVADHLQRCGYEYSLSVFFPESGLAKEKVFTMQDLLQLIKINPTSSLYKSLVSGSDKE-NQKGFLMHFLKELAE-YHQAKESCNMETQTSSTFNRDSLAEKLQLIDDQFADAYPQRIKFESLEIKLNEYKREIEEQLRAEMCQKLKFFKDTEIAKIKMEAKKKYEKELTMFQNDFEKACQAKSEALVLREKSTLERIHKHQEIETKEIYAQRQLLLKDMDLLRGREAELKQRVEAFELNQKLQEEKHKSITEALRRQEQNIKSFEETYDRKLKNELLKYQLELKDDYIIRTN---RLIEDERKNKEKAVHLQEELIAINSKKEELNQSVNRVKELELELESVKAQSLAITKQNHMLNEKVKEMSDY 437

The following BLAST results are available for this feature:

BLAST of TCONS_00064367-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00064367-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
OFD1	1.093e-36	29.41	Oral-facial-digital syndrome 1 protein OS=Homo sap...	[more]

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TCONS_00064367-protein (polypeptide) - C. hemisphaerica