TCONS_00064432-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00064432-protein
Unique NameTCONS_00064432-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length949

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00064432-protein ID=TCONS_00064432-protein|Name=TCONS_00064432-protein|organism=Clytia hemisphaerica|type=polypeptide|length=949bp
IVVIVWKMKSQELANYFVVISFNVNFIVAAYLTRPPLTASSGTCQITIDT
GRSSREYRFQEQLVLSHCVYCDCLPGNIASCFKTDINDTKSTLCLDCNII
SSRDVACSYCWHPLWSKDFSIFNISRLGEEIEVSEFDCATCTCSRRGTVY
CIYLQQRCYSVSNCVQMFKTLKNETLATDKKCRKCLFDGDKKDRLARWNI
NYDTLSIPCRCEDSGESVCEISATPTMWLPFKKICRNCTTTSLVKKTFVT
KDCSIGGVNLIHNSWQFISKDSTYHCFQCACYMGQLKCLMPDRKVEIYHC
VGKDCLEEYESLSTSIRCSLPVHQNKCPPGYLFSWSNQVCNITCIHGSKM
FNVIKEKWCTNLGLSDPCEKCPDKKSFLEANKNHVLICHNSSLYIWKDQI
CDTRKDCPDGKDEENCEKYYCRFGEDKAGIFWNPTEVDTTVSRECSSLVS
DSALKGQFTRSCIYSPQNETIWTKANYCDCNRINFPVFDNPGNLTCNKQS
LDYMIRSITKLRFHAWQSTNKRLHDIEAKKILNVLYDICXNKRLHDIEAK
KILNVLYDICKEDTGKGKLIKMNQTFVYIPGRMVFKEQYTKILQEADNLQ
HSRYQCSTINMPFVKMRQFLIRYFSIIGITNENNHAVLLGAKRNWDRFAQ
MQHMVQQRENVKELENNHMDAVFFDELENFNRFEEILAAISITFLSLGLI
VFQFFSKKTMKIRIHQNLMFVFLLSFLVLKISLWFVPDLQKKSKAGCLVV
SLSSYFFTLCTLSWMMVEGINIVILVVFVFQHHKNKLFKLYLLIGYGFPL
ILTGIFGGVYHDQFQNAEYCTALGGDYIWLLKGPLTLMLVINVVLFLMII
VKIRKSAKESKPWKNTKRTNSSMKTFLVLVPLLGLPFILAPFVEYNKYIA
YAFVLMNSLSGLYLFIGHVLIDPVIKDKVLRRTKNFGKTSLSKTNSTTI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_040404XLOC_040404Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00064432TCONS_00064432Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000832GPCR_2_secretin-like
IPR002172LDrepeatLR_classA_rpt
IPR017981GPCR_2-like
IPR001879GPCR_2_extracellular_dom
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
GO:0005515protein binding
GO:0004888transmembrane signaling receptor activity
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
GO:0007166cell surface receptor signaling pathway
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007166 cell surface receptor signaling pathway
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
molecular_function GO:0004930 G-protein coupled receptor activity
molecular_function GO:0005515 protein binding
molecular_function GO:0004888 transmembrane signaling receptor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000832GPCR, family 2, secretin-likePRINTSPR00249GPCRSECRETINcoord: 749..772
score: 23.16
coord: 788..813
score: 26.4
coord: 829..854
score: 30.12
coord: 872..892
score: 37.85
coord: 713..737
score: 25.49
IPR000832GPCR, family 2, secretin-likePFAMPF000027tm_2coord: 688..912
e-value: 4.7E-35
score: 121.0
IPR002172Low-density lipoprotein (LDL) receptor class A repeatSMARTSM00192LDLa_2coord: 380..418
e-value: 0.0099
score: 22.2
IPR002172Low-density lipoprotein (LDL) receptor class A repeatSUPERFAMILY57424LDL receptor-like modulecoord: 384..416
NoneNo IPR availableGENE3D1.20.1070.10coord: 685..948
e-value: 3.2E-21
score: 75.0
NoneNo IPR availableGENE3D4.10.1220.10coord: 387..423
e-value: 2.0E-6
score: 27.2
NoneNo IPR availableCDDcd00112LDLacoord: 388..416
e-value: 0.00334359
score: 35.6454
IPR017981GPCR, family 2-likePROSITEPS50261G_PROTEIN_RECEP_F2_4coord: 680..922
score: 25.367
IPR001879GPCR, family 2, extracellular hormone receptor domainPROSITEPS50227G_PROTEIN_RECEP_F2_3coord: 406..484
score: 8.908

Blast
[Close]
BLAST of TCONS_00064432-protein vs. Swiss-Prot (Human)
Match: AGRD1 (Adhesion G-protein coupled receptor D1 OS=Homo sapiens GN=ADGRD1 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.793e-18
Identity = 69/266 (25.94%), Postives = 125/266 (46.99%), Query Frame = 0 
Query:  689 AISITFLSLGLIVFQFFSK----KTMKIRIHQNLMFVFLLSFLVLKISLWFVPDLQKKSKAGCLVVSLSSYFFTLCTLSWMMVEGINIVILVVFVFQHHKNKLFKLYLLIGYGFPLILTGIFGGVYHDQFQNAEYC-TALGGDYIWLLKGPLTLMLVINVVLFLMIIVKIRK-SAKESKPWKNTKRTNSSMKTFLVLVPLLGLPFILAPFVEYNKYIA--YAFVLMNSLSGLYLFIGHVLIDPVIKDKVLRRTKNFGKTSLSKTNS 946
            ++S+  L   L+ F   S     +  +  IH NL F  L++ ++L IS    P         C V+++  ++F L   +WM+VEG+++  +V+ VF    +K  + Y  +G+GFPL++  I      D +  +  C  +L    IW    P   ++V+N+ + + +   I + SA   K   +      + K   VL+P+LG  ++          +   Y F  +NSL GL++F+ H L++  ++     +TK +  TS S   S
Sbjct:  575 SLSVLCLVATLVTFAVLSSVSTIRNQRYHIHANLSFAVLVAQVLLLISFRLEPGTTP-----CQVMAVLLHYFFLSAFAWMLVEGLHLYSMVIKVFGSEDSK-HRYYYGMGWGFPLLICIISLSFAMDSYGTSNNCWLSLASGAIWAFVAPALFVIVVNIGILIAVTRVISQISADNYKIHGDPSAFKLTAKAVAVLLPILGTSWVFGVLAVNGCAVVFQYMFATLNSLQGLFIFLFHCLLNSEVRAAFKHKTKVWSLTSSSARTS 834
The following BLAST results are available for this feature:
BLAST of TCONS_00064432-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AGRD11.793e-1825.94Adhesion G-protein coupled receptor D1 OS=Homo sap... [more]
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