TCONS_00064441-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00064441-protein
Unique Name	TCONS_00064441-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	619

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00064441-protein ID=TCONS_00064441-protein|Name=TCONS_00064441-protein|organism=Clytia hemisphaerica|type=polypeptide|length=619bp
IASSSTSMLQIFYNKKSTMVSMKDGKQTPNSRRTSQGKSKEEKLSKQLDE
KLYFSESSSESEDEEESTDRRHESNADLPSEYWQIQKLVKYLKGGNQTAT
IIALVAMRDFNLQLETCQLAIRDVGGLEVLINLLETNELKCQIGSLKILK
DISTNLQIRKTIVDLGGLQTMVKILNSSNKELKCLAAETISHVARFRRAR
RTVRQYGGIQQLVCLLNCGDVLKAPDFLIDVARAGALALWSCSKSTKNKI
AIKNAGGIPLLAKLLKSNNENMLIPVVGTLQECAQEPTYRSAIRTEGMVE
DLVFNLKKENAELQRHCASAIFKCAEDKETRDLVRQYGGLEPLATLLGNT
DKKDLLVAVTGAVWKCAISEENVLVFQELKAIEQLVVLLNNQPEEVLINV
VGALGECAKIPINRAAIRKANGISPMVGLLTGTNQQLLVNVTKAVGKCAM
EQENMAIVDRLDGVRLLWSLLKNPNPEVQSSAAWAICPCIENAKDAGEMV
RSFVGGLELIVSLLKSEETEVLASVCAAIANIAKDEENLAVITDHGVVPM
LAKLTHTSDDRLRHHLAEAIARCCTWGNNRVAFGQAGAVAPLVDYLNSKN
SDVHRAXCFRSSWCRSSTC

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_040410	XLOC_040410	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00064441	TCONS_00064441	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000225	Armadillo
IPR011989	ARM-like
IPR016024	ARM-type_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0005488	binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000225	Armadillo	SMART	SM00185	arm_5	coord: 451..491 e-value: 110.0 score: 5.1 coord: 369..409 e-value: 5.5 score: 15.3 coord: 245..285 e-value: 0.017 score: 24.3 coord: 327..368 e-value: 18.0 score: 11.3 coord: 492..534 e-value: 8.3 score: 13.9 coord: 155..195 e-value: 0.1 score: 21.7 coord: 114..154 e-value: 83.0 score: 6.1 coord: 535..575 e-value: 14.0 score: 12.2 coord: 410..450 e-value: 290.0 score: 2.0
IPR000225	Armadillo	PFAM	PF00514	Arm	coord: 246..281 e-value: 1.3E-5 score: 25.0
IPR000225	Armadillo	PROSITE	PS50176	ARM_REPEAT	coord: 256..298 score: 8.802
IPR000225	Armadillo	PROSITE	PS50176	ARM_REPEAT	coord: 505..547 score: 11.217
IPR000225	Armadillo	PROSITE	PS50176	ARM_REPEAT	coord: 166..208 score: 9.222
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 300..418 e-value: 5.2E-19 score: 67.8 coord: 419..604 e-value: 1.5E-29 score: 102.5 coord: 16..299 e-value: 2.2E-32 score: 111.7
None	No IPR available	CDD	cd00020	ARM	coord: 374..487 e-value: 1.06092E-7 score: 49.2351
None	No IPR available	CDD	cd00020	ARM	coord: 251..364 e-value: 4.65661E-9 score: 53.4723
None	No IPR available	CDD	cd00020	ARM	coord: 458..572 e-value: 5.72509E-14 score: 68.1099
None	No IPR available	CDD	cd00020	ARM	coord: 119..280 e-value: 5.48442E-6 score: 43.8424
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 231..606
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 78..284

Blast

[Close]

BLAST of TCONS_00064441-protein vs. Swiss-Prot (Human)
Match: ARMC4 (Armadillo repeat-containing protein 4 OS=Homo sapiens GN=ARMC4 PE=1 SV=1)

HSP 1 Score: 792.341 bits (2045), Expect = 0.000e+0
Identity = 388/546 (71.06%), Postives = 461/546 (84.43%), Query Frame = 0

Query:   70 RRHESNADLPSEYWQIQKLVKYLKGGNQTATIIALVAMRDFNLQLETCQLAIRDVGGLEVLINLLETNELKCQIGSLKILKDISTNLQIRKTIVDLGGLQTMVKILNSSNKELKCLAAETISHVARFRRARRTVRQYGGIQQLVCLLNCG---------DVLKAPDFLIDVARAGALALWSCSKSTKNKIAIKNAGGIPLLAKLLKSNNENMLIPVVGTLQECAQEPTYRSAIRTEGMVEDLVFNLKKENAELQRHCASAIFKCAEDKETRDLVRQYGGLEPLATLLGNTDKKDLLVAVTGAVWKCAISEENVLVFQELKAIEQLVVLLNNQPEEVLINVVGALGECAKIPINRAAIRKANGISPMVGLLTGTNQQLLVNVTKAVGKCAMEQENMAIVDRLDGVRLLWSLLKNPNPEVQSSAAWAICPCIENAKDAGEMVRSFVGGLELIVSLLKSEETEVLASVCAAIANIAKDEENLAVITDHGVVPMLAKLTHTSDDRLRHHLAEAIARCCTWGNNRVAFGQAGAVAPLVDYLNSKNSDVHRA 606
             R E++ADLPSEYWQIQKLVKYLKGGNQTAT+IAL +MRDF+L  ETCQLAIRDVGGLEVLINLLET+E+KC+IGSLKILK+IS N QIR+ IVDLGGL  MV IL+S +K LKCLAAETI++VA+F+RARR VRQ+GGI +LV LL+C           + +A D  ++VAR GALALWSCSKS  NK AI+ AGGIPLLA+LLK+++ENMLIPVVGTLQECA E  YR+AI+ E ++E+LV NL  EN +LQ HCA AI++CAEDKETRDLVR +GGL+PLA+LL NTD K+ L AVTGA+WKC+IS+ENV  F+E KAIE LV LL +QPEEVL+NVVGALGEC +   NR  +RK  GI P+V LL G NQ LLVNVTKAVG CA+E E+M I+DRLDGVRLLWSLLKNP+P+V++SAAWA+CPCI+NAKDAGEMVRSFVGGLELIV+LLKS+  EVLASVCAAI NIAKD+ENLAVITDHGVVP+L+KL +T++++LRHHLAEAI+RCC WG NRVAFG+  AVAPLV YL S +++VHRA
Sbjct:  439 HRQEASADLPSEYWQIQKLVKYLKGGNQTATVIALCSMRDFSLAQETCQLAIRDVGGLEVLINLLETDEVKCKIGSLKILKEISHNPQIRQNIVDLGGLPIMVNILDSPHKSLKCLAAETIANVAKFKRARRVVRQHGGITKLVALLDCAHDSTKPAQSSLYEARD--VEVARCGALALWSCSKSHTNKEAIRKAGGIPLLARLLKTSHENMLIPVVGTLQECASEENYRAAIKAERIIENLVKNLNSENEQLQEHCAMAIYQCAEDKETRDLVRLHGGLKPLASLLNNTDNKERLAAVTGAIWKCSISKENVTKFREYKAIETLVGLLTDQPEEVLVNVVGALGECCQERENRVIVRKCGGIQPLVNLLVGINQALLVNVTKAVGACAVEPESMMIIDRLDGVRLLWSLLKNPHPDVKASAAWALCPCIKNAKDAGEMVRSFVGGLELIVNLLKSDNKEVLASVCAAITNIAKDQENLAVITDHGVVPLLSKLANTNNNKLRHHLAEAISRCCMWGRNRVAFGEHKAVAPLVRYLKSNDTNVHRA 982

HSP 2 Score: 108.612 bits (270), Expect = 1.891e-24
Identity = 108/425 (25.41%), Postives = 186/425 (43.76%), Query Frame = 0

Query:  115 ETCQLAIRDVGGLEVLINLLETNELKCQIGSLKILKDISTNLQIRKTIVDLGGLQTMVKILNSSNKELKCLAAETISHVARFRRARRTVRQYGGIQQLVCLLNCGDVLKAPDFLIDVARAGAL--ALWSCSKSTKNKIAIKNAGGIPLLAKLLKSNNENMLIPVVGTLQECAQEPTYRSAIRTEGMVEDLV-----FN------------------------------------LKKENAELQRHCASAIFKCAED-KETRDLVRQY-GGLEPLATLLGNTDKKDLLVAVTGAVWKCAISEENVLVFQELKAIEQLVVLLNNQPEEVLINVVGALGECAKIPINRAAIRKANGISPMVGLLTGTNQQLLVNVTKAVGKCAMEQENMAIVDRLDGVRLLWSLLKNPNPEVQSSAAWAICPCIENAK 494
             T + AIR  GG+ +L  LL+T+     I  +  L++ ++    R  I     ++ +VK LNS N++L+   A  I   A  +  R  VR +GG++ L  LLN  D         +  R  A+  A+W CS S +N    +    I  L  LL    E +L+ VVG L EC QE   R  +R  G ++ LV      N                                    LK  + +++   A A+  C ++ K+  ++VR + GGLE +  LL  +D K++L +V  A+   A  +EN+ V  +   +  L  L N    ++  ++  A+  C     NR A  +   ++P+V  L   +  +     +A+ + + + +N   +     V+LL  ++ +P+ ++Q +AA     CI N +
Sbjct:  622 HTNKEAIRKAGGIPLLARLLKTSHENMLIPVVGTLQECASEENYRAAIKAERIIENLVKNLNSENEQLQEHCAMAIYQCAEDKETRDLVRLHGGLKPLASLLNNTD---------NKERLAAVTGAIWKCSISKENVTKFREYKAIETLVGLLTDQPEEVLVNVVGALGECCQERENRVIVRKCGGIQPLVNLLVGINQALLVNVTKAVGACAVEPESMMIIDRLDGVRLLWSLLKNPHPDVKASAAWALCPCIKNAKDAGEMVRSFVGGLELIVNLL-KSDNKEVLASVCAAITNIAKDQENLAVITDHGVVPLLSKLANTNNNKLRHHLAEAISRCCMWGRNRVAFGEHKAVAPLVRYLKSNDTNVHRATAQALYQLSEDADNCITMHENGAVKLLLDMVGSPDQDLQEAAA----GCISNIR 1032

The following BLAST results are available for this feature:

BLAST of TCONS_00064441-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00064441-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ARMC4	1.891e-24	71.06	Armadillo repeat-containing protein 4 OS=Homo sapi...	[more]

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TCONS_00064441-protein (polypeptide) - C. hemisphaerica