TCONS_00064579-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00064579-protein
Unique NameTCONS_00064579-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length189

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00064579-protein ID=TCONS_00064579-protein|Name=TCONS_00064579-protein|organism=Clytia hemisphaerica|type=polypeptide|length=189bp
MVKNVCSKTYVTPRRPFEKARLDQELKLIGEFGLKNKREVWRVKFALAKI
RKRARDLLTLGEKDNRRLFEGNALLRRLVRIGVLDEGRMKLDYVLGLKVE
DFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQLVNVPSFLVRLDS
QKHIDFCTNSPYGGGAPGRVKRKNAAKGKGGDAEEEDDE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_040498XLOC_040498Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00064579TCONS_00064579Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001912Ribosomal_S4/S9_N
IPR002942S4_RNA-bd
IPR005710Ribosomal_S4/S9_euk/arc
IPR018079Ribosomal_S4_CS
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0015935small ribosomal subunit
Vocabulary: Molecular Function
TermDefinition
GO:0019843rRNA binding
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0015935 small ribosomal subunit
molecular_function GO:0003723 RNA binding
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001912Ribosomal protein S4/S9, N-terminalSMARTSM01390Ribosomal_S4_2coord: 3..104
e-value: 1.6E-16
score: 70.9
IPR002942RNA-binding S4 domainGENE3D3.10.290.10coord: 98..188
e-value: 1.4E-10
score: 40.7
IPR002942RNA-binding S4 domainPFAMPF01479S4coord: 105..148
e-value: 4.5E-9
score: 35.8
IPR002942RNA-binding S4 domainPROSITEPS50889S4coord: 105..179
score: 9.519
IPR005710Ribosomal protein S4/S9, eukaryotic/archaealTIGRFAMTIGR01018TIGR01018coord: 3..162
e-value: 1.2E-69
score: 231.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 162..189
NoneNo IPR availableCDDcd00165S4coord: 105..147
e-value: 4.19912E-6
score: 41.081
NoneNo IPR availableSUPERFAMILY55174Alpha-L RNA-binding motifcoord: 8..162
IPR018079Ribosomal protein S4, conserved sitePROSITEPS00632RIBOSOMAL_S4coord: 103..127

Blast
[Close]
BLAST of TCONS_00064579-protein vs. Swiss-Prot (Human)
Match: RS9 (40S ribosomal protein S9 OS=Homo sapiens GN=RPS9 PE=1 SV=3)

HSP 1 Score: 310.071 bits (793), Expect = 3.070e-109
Identity = 157/187 (83.96%), Postives = 167/187 (89.30%), Query Frame = 0 
Query:    5 VCSKTYVTPRRPFEKARLDQELKLIGEFGLKNKREVWRVKFALAKIRKRARDLLTLGEKDNRRLFEGNALLRRLVRIGVLDEGRMKLDYVLGLKVEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQLVNVPSFLVRLDSQKHIDFCTNSPYGGGAPGRVKRKN----AAKGKGGDAEEED 187
            VC KTYVTPRRPFEK+RLDQELKLIGE+GL+NKREVWRVKF LAKIRK AR+LLTL EKD RRLFEGNALLRRLVRIGVLDEG+MKLDY+LGLK+EDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQ+VN+PSF+VRLDSQKHIDF   SPYGGG PGRVKRKN          GD EEED
Sbjct:    8 VCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKKGQGGAGAGDDEEED 194
The following BLAST results are available for this feature:
BLAST of TCONS_00064579-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RS93.070e-10983.9640S ribosomal protein S9 OS=Homo sapiens GN=RPS9 P... [more]
back to top