TCONS_00064720-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00064720-protein
Unique NameTCONS_00064720-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length495

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00064720-protein ID=TCONS_00064720-protein|Name=TCONS_00064720-protein|organism=Clytia hemisphaerica|type=polypeptide|length=495bp
MDGGGDGSPRRDMDQPQPPSAPPVDTSVSDLLKAAEEGGATQDNGGGDGV
ASADNGGGGVGVQPQINVATGVNKKATEQKVSTRRPGRAPDIPVFERRNW
LIHMHYVRKDYDTCKALIEESLMESHGTCEYALYVKALILREEGDIQQSL
DVFQICVQYNSNNPDNLKQVARSLFLLGRHKASLQVYKEASKLSIDDWEI
FHNQGVCLMYLKQFERAKELLRKALHTSRHDITYMMLGKCYLMENDLMGA
TEVFKKAIEFSPENVDLMTTLGVLYLQTGHNQRAFDQFGSSLTYEVTNVK
AILAAGAMIQDKGDFEVALVKYRTAATQIPESPQLWNNVGMCFFGKKKYV
AAISCLKHAAFLAPFEWTIMHNLGLVFLAMSQYASAFHYLSAAITLKPKI
AKLFMLLAVALTYLDSMEDAQKAYEQAIQLNGDHMVHLNYAVFLNKISMQ
RAASQQLSMYKKKLEATQNIIDPEAKGVAARLEVALQVGEVHDAC
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_040596XLOC_040596Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00064720TCONS_00064720Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom
IPR013026TPR-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 367..400
e-value: 0.79
score: 18.8
coord: 265..298
e-value: 170.0
score: 4.1
coord: 333..366
e-value: 0.6
score: 19.2
coord: 401..434
e-value: 0.11
score: 21.6
coord: 164..197
e-value: 99.0
score: 6.2
coord: 198..231
e-value: 0.033
score: 23.4
coord: 232..264
e-value: 20.0
score: 12.3
coord: 130..163
e-value: 6.6
score: 15.7
IPR019734Tetratricopeptide repeatPFAMPF13181TPR_8coord: 200..225
e-value: 0.11
score: 12.7
coord: 401..434
e-value: 0.019
score: 15.0
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 130..163
score: 6.284
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 164..197
score: 5.635
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 367..400
score: 8.791
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 299..332
score: 6.844
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 401..434
score: 8.555
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 231..264
score: 11.033
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 265..298
score: 7.67
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 333..366
score: 7.257
NoneNo IPR availableGENE3D1.20.58.280coord: 412..471
e-value: 6.9E-5
score: 22.2
NoneNo IPR availablePFAMPF13431TPR_17coord: 254..284
e-value: 1.3E-4
score: 22.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..90
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 80..245
e-value: 2.8E-25
score: 88.5
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 246..288
e-value: 1.0E-9
score: 37.7
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 289..341
e-value: 2.3E-4
score: 20.8
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 342..379
e-value: 2.1E-8
score: 33.5
coord: 380..411
e-value: 1.0E-6
score: 28.1
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 230..440
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 108..266
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 130..434
score: 46.584

Blast
[Close]
BLAST of TCONS_00064720-protein vs. Swiss-Prot (Human)
Match: BBS4 (Bardet-Biedl syndrome 4 protein OS=Homo sapiens GN=BBS4 PE=1 SV=2)

HSP 1 Score: 477.633 bits (1228), Expect = 2.361e-165
Identity = 242/430 (56.28%), Postives = 323/430 (75.12%), Query Frame = 0 
Query:   78 EQKVSTR------------RPGRAPDIPVFERRNWLIHMHYVRKDYDTCKALIEESLMESHGTCEYALYVKALILREEGDIQQSLDVFQICVQYNSNNPDNLKQVARSLFLLGRHKASLQVYKEASKLSIDDWEIFHNQGVCLMYLKQFERAKELLRKALHTSRHDITYMMLGKCYLMENDLMGATEVFKKAIEFSPENVDLMTTLGVLYLQTGHNQRAFDQFGSSLTYEVTNVKAILAAGAMIQDKGDFEVALVKYRTAATQIPESPQLWNNVGMCFFGKKKYVAAISCLKHAAFLAPFEWTIMHNLGLVFLAMSQYASAFHYLSAAITLKPKIAKLFMLLAVALTYLDSMEDAQKAYEQAIQLNG-DHMVHLNYAVFLNKISMQRAASQQLSMYKKKLEATQNI----IDPEAKGVAARLEVALQVGE 490
            E++V+TR            R  +AP+ P+ E++NWLIH+HY+RKDY+ CKA+I+E L E+ G CEYA+YV+ALI R EG+IQ+SL++FQ C   +  + DNLKQVARSLFLLG+HKA+++VY EA+KL+  DWEI HN GVC +YLKQF +A++ L  AL+ +RHD+TY+MLGK +L+E DL  A EV+KKA+EFSPEN +L+TTLG+LYLQ G  Q+AF+  G++LTY+ TN KAILAAG+M+Q  GDF+VAL KYR  A  +PESP LWNN+GMCFFGKKKYVAAISCLK A +LAPF+W I++NLGLV L M QYASAFH+LSAAI  +PK+ +L+MLLAVALT L+ +E+A++AY +A+ L+  + +V+LNYAV L     ++ A  Q    +KK+   ++      D E   +A +L  ALQVGE
Sbjct:    3 EERVATRTQFPVSTESQKPRQKKAPEFPILEKQNWLIHLHYIRKDYEACKAVIKEQLQETQGLCEYAIYVQALIFRLEGNIQESLELFQTCAVLSPQSADNLKQVARSLFLLGKHKAAIEVYNEAAKLNQKDWEISHNLGVCYIYLKQFNKAQDQLHNALNLNRHDLTYIMLGKIHLLEGDLDKAIEVYKKAVEFSPENTELLTTLGLLYLQLGIYQKAFEHLGNALTYDPTNYKAILAAGSMMQTHGDFDVALTKYRVVACAVPESPPLWNNIGMCFFGKKKYVAAISCLKRANYLAPFDWKILYNLGLVHLTMQQYASAFHFLSAAINFQPKMGELYMLLAVALTNLEDIENAKRAYAEAVHLDKCNPLVNLNYAVLLYNQGEKKNALAQYQEMEKKVSLLKDNSSLEFDSEMVEMAQKLGAALQVGE 432
The following BLAST results are available for this feature:
BLAST of TCONS_00064720-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BBS42.361e-16556.28Bardet-Biedl syndrome 4 protein OS=Homo sapiens GN... [more]
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