TCONS_00064944-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00064944-protein
Unique Name	TCONS_00064944-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1341

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00064944-protein ID=TCONS_00064944-protein|Name=TCONS_00064944-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1341bp
QSYDFQKKQKNLELNVQLNDYFGNNTTFKNISKMIKRPSALDDDEDLIRM
QNEYIKSKQKPAASVVRLSSQQKDIVTLKDDTSEDQNVNANQKPQKRRER
LSDLTQAAERLDQKDQEQHFTSVLKRIVERPIADNVMLNLQQFKGGFPSV
PIIKADKVNKSKTGKKKSLFAQQFNKLDKKKDLGQENIPNQPKDQTADSQ
NVTKDEELPLDSLDEAASMNIVSCGDSIKTGIDEENRSKLCSMSKEEILE
EQEKLLSTLDPKLVAFLKNRSAKRIEKTEQKKPNKSSLSTPKAVLIQVDE
TQANDADITQKKTGNKDNPDPLNPFAEFDIQKDYVNMKDIEKDKLEWMKK
VPKIELNQESITPRFDFEGNLLSPDQDTPTHLGLHHHGNDPGLPGYSLEE
LFQMIRSNFLQHRNIGLQTLSKIIEKYHKGTYIDNLSTDLLEICLNAGLV
FILRWSLDEQTEQIYSASLAALANVLFIERDQEAIEKISYSEDGFRLPSL
CTYYKKRKEEMTQEEQEENRDPTDAELMERDIVKALIQMRILPRLRYLLD
ESPLSPVAFKHCLHILQRISQHNIETAYEIYKCPGMIHILMRALLENKDG
QDSIYRLFRFLFIAGKNMAHNTISKQPTLLENMTAKFTIHSFGQNDKLFE
EICKLWAVLLSYDLASNAVNDLYTVLLRHLQHASANYTDCKDTTVASLVV
LVKHMIVSGQHKRVDWNLVEGVFTLVQFSLQKMLTDVKKIGKITHPMYLS
VLICCCTQYFASKNGMVNIIEPVAYLNDVGKFWSEHINDFIYSDFMKKLF
LDASAHSDFKNSPKKDEYRTVKDLVNLPTYGSRCFLSQPSLPSLSKDSPV
LILQALMGMLNELTSINKQLLTKVKAFVLSPNMTAMCSNFLEYNNYKRSS
ELASTRIELLTLWHSLQIYQRVVSFCGMGSTNQQCNDIYLQTGYRLVSLL
QPGDEQLAVTIMRTIAFNPKILQTKLYVIRVSESCSTETTQKIENQLKSG
HEFLQRTGSMYEANLFPNANDLLNNEKPSFDSLLTASRANKILPSDWMFF
PIVQLYNESLSLEFSGKVISRASSDAFRLLQDCLQYILLLEVTRPALLAD
VSETLRLTRLMCVFLTEGDLYSEETVRDLLTSLLAVYSSNAFLSYLNLEE
KIPGITSFYDIYKSLIEQYLSASYGDSLFANVLLFPTQLCHDVKYRRTLW
TEHSSILRVFPTPLNKVMLNIKSFLASESENMEMIRLYYRTFIAKRLSKN
WCPLFYVIAIHHLVQFIFNAQISDETPKDEAEEILKERQSMLNGILTLQD
TELRDDVIYYKFYDIHSKQSCIERFTQLPPSREKFLRDLKS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_040725	XLOC_040725	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00064944	TCONS_00064944	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013929	RNA_pol_II_AP1_C
IPR013930	RNA_pol_II_AP1_N
IPR011989	ARM-like
IPR016024	ARM-type_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0005488	binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 1340..1341
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 300..326
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 180..202
IPR013929	RNA polymerase II-associated protein 1, C-terminal	PFAM	PF08620	RPAP1_C	coord: 364..427 e-value: 1.0E-22 score: 79.9
IPR013930	RNA polymerase II-associated protein 1, N-terminal	PFAM	PF08621	RPAP1_N	coord: 231..274 e-value: 1.8E-18 score: 65.9
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 396..911 e-value: 2.4E-7 score: 29.8
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 393..477 coord: 528..703

Blast

[Close]

BLAST of TCONS_00064944-protein vs. Swiss-Prot (Human)
Match: RPAP1 (RNA polymerase II-associated protein 1 OS=Homo sapiens GN=RPAP1 PE=1 SV=3)

HSP 1 Score: 452.21 bits (1162), Expect = 3.516e-136
Identity = 379/1436 (26.39%), Postives = 645/1436 (44.92%), Query Frame = 0

Query:   34 MIKRPSALDDDEDLIRMQNEYIKSKQKPAASVVRLSSQ--------------QKDIVTLKDDTSEDQNVNANQKPQKRRER----LSDLTQAAERLDQKDQEQHFTSVLKRIVERPIADNVMLNLQQFKG-GFPSVPIIKADKVNKSKTGKKKSLFAQQFNK---LDKKKDLGQENIPNQPKDQTADSQNVTKDEELPLDSLDEAASMNIVSCGDSIKTG--------------IDEENRSKLCSMSKEEILEEQEKLLSTLDPKLVAFLKNRSAKRIEKTEQKKPNKSSLSTPKAVLIQVDETQANDADITQKKTGNKDNPDPLNPFAEFDI--QKDYVNMKDIEKDKLEWMKKVPKI--ELNQESITPRFDFEGNLLSPDQDTPTHLGLHHHGNDPGLPGYSLEELFQMIRSNFLQHRNIGLQTLSKIIEKYHKGTYIDNLSTDLLEICLNAGLVFILRWSLDEQTEQIYSASLAALANVLFIERDQEAIEK-ISYSEDGFRLPSL--------------CTYYKKRKEEMTQEEQEENRDPTDAELMERDIVKALIQMRILPRLRYLLDESPLSPVAFKHCLHILQRISQHNIETAYEIYKCPGMIHILMRALLE------NKDGQDSIYR--------LFRFLFIAGKNMAHNTIS------KQPTLLENMTAKFTIHSFGQNDKLFEEICKLWAVLLSYDLASNAVNDLYTVLLRHLQHASANYTD-----------------------CKDTTVASLVVLVKHMIVSGQHKRVDWNLVEGVFTLVQFSLQKMLTDVKK--IGKITHPMYLSVLICCCTQYFASKNGMVNIIEPVAYLNDVGKFWSEHINDFIYSDFMKKLFLDASAHSDFKNSPKKDEYRTVKDLVNLPTYGS-RCFLSQPSLPSLSKDSPVLILQALMGMLNELTSINKQLLTKVKAFVLSPNMTAMCSNFLEYNNYKRSSELASTRIELLTLWHSLQIYQRVVSFCGMGSTNQQCNDIYLQTGYRL--VSLLQPGDEQLAVTIMRTIAFNPKILQTKLYVIRVSESCSTETTQKIENQLKSGHEFLQRTGSMYEANLFPNA--------NDLLNNEKPSFDSLLTASRANK-----------------ILPSDWMFFPIVQLYNESLSLEFSGKVISRASSDAFRLLQDCLQYILLLEVTRPALLADVSETLRLTRLMCVFLTEGDLYSEETVRDLLTSLLAVYSSNAFLSYLNLEEKIPGITSFYDIYKSLIEQYLSASYGDSLFANVLLFPTQLCHDVKYRRTLWTEHSSILRVFPTPLNKVMLNIKSFLASESENMEMIRLYYRTFIAKRLSKNWCPLFYVIAIHHLVQFIFNAQISDETPKDEAEEILKERQSMLNGILTLQDTELRDDVIYYKFYDIHSKQSCIERFTQLPPSREKFLRDLKS 1341
            M+ RP   + + DL+  Q++++ +   PA  +V+  ++               +D+V L D+  +         P++ R      L +     ERL + DQ  H T+VL +I+ER    +V +NL    G  FP+V +   D   KS T  K+S+FAQ+       + K     E +PN    + A    VT +   P +   +    +    G ++ TG              I EEN ++L +M+ EEIL+EQ++LL+ LDP LVAFL++ S  + E+T +    +     P A + + +   +  A   +K+    D  +P  P     +  QK++++M  +E +KL W + +P +  +  QE +  RF  +G LL+PD D PTHLGLHHHG +    GYSL+ELF + RS   Q R + L  L+++I +   G + D L+  +L + L+AG +F+LR+SLD++ + + + ++ AL  +L    D+E ++   S+       P +              C   K ++    +  +EE+R P D  L   D++K L+   +LPRLRY+L+ +   P      L +L R+++H++E+A  + +CP +I  ++R  L             S+Y+        L R L  AG+N+A   +S      +   ++     +  +    + + L  E  +LWAV  SY        +LY VL+R LQ      +                           +T A  +       +S     V W  V G+  LV+  L++ L  + +  + +   P+ ++ L+     Y A      +   P  +L D+ +   E +   +    +  L+ D+  H     +P       V  L   P+  S  C    P L      SP   L AL+ +LN L  I+K L  ++ A + +P +    + FL+      +  L       L   + LQ     ++               L  G  L  +S L PG E L   ++ +  F  + L  +        +          +QL  G   + R G   +  L   A        N  L +  P+  SLL +   ++                 +LP+DW F P+++LY+ + S   SG   +     A R+LQ    ++L+LE  RP  L  V    RL RLMCVFL + +L+ E  V+ L+ +LLA       L  LNL+ ++PG+TSF D+Y + ++ + + S+GD LF  ++L P Q    V  R  L+ EH   LR    PL ++ ++++ +     +N+ +++LY+RT +   L   WCP+ Y +A+ H+  FIF+     + P+  ++E+   R+SML     L D  LR  +++YK  +    +   E ++QLPP R+ +L+ L S
Sbjct:    1 MLSRPKPGESEVDLLHFQSQFLAAGAAPAVQLVKKGNRGGGDANSDRPPLQDHRDVVML-DNLPDLPPALVPSPPKRARPSPGHCLPEDEDPEERLRRHDQ--HITAVLTKIIER-DTSSVAVNLPVPSGVAFPAVFLRSRDTQGKSATSGKRSIFAQEIAARRIAEAKGPSVGEVVPNVGPPEGA----VTCETPTPRNQGCQLPGSSHSFQGPNLVTGKGLRDQEAEQEAQTIHEENIARLQAMAPEEILQEQQRLLAQLDPSLVAFLRSHSHTQ-EQTGETASEEQRPGGPSANVTKEEPLMSAFASEPRKR----DKLEPEAPALALPVTPQKEWLHMDTVELEKLHWTQDLPPVRRQQTQERMQARFSLQGELLAPDVDLPTHLGLHHHGEEAERAGYSLQELFHLTRSQVSQQRALALHVLAQVISRAQAGEFGDRLAGSVLSLLLDAGFLFLLRFSLDDRVDGVIATAIRALRALLVAPGDEELLDSTFSWYHGALTFPLMPSQEDKEDEDEDEECPAGKAKR----KSPEEESRPPPD--LARHDVIKGLLATSLLPRLRYVLEVTYPGPAVVLDILAVLIRLARHSLESATRVLECPRLIETIVREFLPTSWSPVGAGPTPSLYKVPCATAMKLLRVLASAGRNIAARLLSSFDLRSRLCRIIAEAPQELALPP-EEAEMLSTEALRLWAVAASYGQGGYLYRELYPVLMRALQVVPRELSTHPPQPLSMQRIASLLTLLTQLTLAAGSTPAETISDSAEASLSATPSLVTWTQVSGLQPLVEPCLRQTLKLLSRPEMWRAVGPVPVACLLFLGAYYQAWSQQPSSC--PEDWLQDMQRLSEELLLPLLSQPTLGSLW-DSLRHCSLLCNP----LSCVPALEAPPSLVSLGCSGGCPRLSLAGSASPFPFLTALLSLLNTLAQIHKGLCGQLAAILAAPGLQ---NYFLQCVAPGAAPHLTPFSAWALRHEYHLQYLALALAQKAAALQPLPATHAALYHGMALALLSRLLPGSEYLTHELLLSCVFRLEFLPER--------TSGGPEAADFSDQLSLGSSRVPRCG---QGTLLAQACQDLPSIRNCYLTHCSPARASLLASQALHRGELQRVPTLLLPMPTEPLLPTDWPFLPLIRLYHRA-SDTPSGLSPTDTMGTAMRVLQ----WVLVLESWRPQALWAVPPAARLARLMCVFLVDSELFRESPVQHLVAALLAQLCQPQVLPNLNLDCRLPGLTSFPDLYANFLDHFEAVSFGDHLFGALVLLPLQRRFSVTLRLALFGEHVGALRALSLPLTQLPVSLECYTVPPEDNLALLQLYFRTLVTGALRPRWCPVLYAVAVAHVNSFIFS-----QDPQS-SDEVKAARRSMLQKTWLLADEGLRQHLLHYKLPNSTLPEG-FELYSQLPPLRQHYLQRLTS 1383

The following BLAST results are available for this feature:

BLAST of TCONS_00064944-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00064944-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RPAP1	3.516e-136	26.39	RNA polymerase II-associated protein 1 OS=Homo sap...	[more]

You are here

TCONS_00064944-protein (polypeptide) - C. hemisphaerica