TCONS_00064992-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00064992-protein
Unique Name	TCONS_00064992-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	528

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00064992-protein ID=TCONS_00064992-protein|Name=TCONS_00064992-protein|organism=Clytia hemisphaerica|type=polypeptide|length=528bp
MITRRARRRVNSQQEEDQVEEAATLNVITIEDSPNEESESNNMTDTEADV
HMKTPEGSNTRSTACAVQTTPGLALNGPPIEQDQVAKTLPLNDSMDEEQS
CPICFEMWTSAGAHRLVSLPCGHLFGRSCIERWLKEPKNKCCPQCKSTAK
RKDIRNIFAKSLKALDTSEKEQVKKALLEEQYKRSKAEENEAKAVLQCQL
MQAEMEKLRKQISEQANQTKSSVASSSRGDVAGPSGSGVQSTFMARNHLF
SPMKATQQHSQQQRRPANPRRPALSDYGKSYKFQRTLQVSQKDARVLAYD
GTHMTMVVTKPSPNQLFKGFGVLKVSSLEQRSSEYISIHSNTIRDAKFNS
TGDRLLLTASVDKTLKLTSVLSNSMVQSYTCPNPVWACAWDESNCNYVYA
GLQNGQCYVYDIRQSSVELSVIRPRLGVPRPIVSLAYVPPGNENSVLRCQ
GVLVGTLQGGWFIQNVNNENFIDHQLILPEGSCSGLYFDKTNRSCLLSQR
PGKSNHRIIQSVSSIHPECKFHSSRAKF

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_040753	XLOC_040753	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00064992	TCONS_00064992	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR001680	WD40_repeat
IPR013083	Znf_RING/FYVE/PHD
IPR015943	WD40/YVTN_repeat-like_dom
IPR017986	WD40_repeat_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 168..218
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 211..238
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 253..277
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 89..150
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 101..145 e-value: 2.0E-5 score: 34.0
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 100..146 e-value: 5.4E-9 score: 36.1
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 101..146 score: 12.77
IPR001841	Zinc finger, RING-type	CDD	cd00162	RING	coord: 101..148 e-value: 1.53811E-8 score: 50.1368
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 329..369 e-value: 0.072 score: 22.2 coord: 372..411 e-value: 0.51 score: 18.8
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10		coord: 7..230 e-value: 4.1E-17 score: 61.9
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	2.130.10.10		coord: 281..510 e-value: 3.1E-18 score: 65.4
IPR017986	WD40-repeat-containing domain	SUPERFAMILY	50978	WD40 repeat-like	coord: 334..492

Blast

[Close]

BLAST of TCONS_00064992-protein vs. Swiss-Prot (Human)
Match: RFWD3 (E3 ubiquitin-protein ligase RFWD3 OS=Homo sapiens GN=RFWD3 PE=1 SV=3)

HSP 1 Score: 257.299 bits (656), Expect = 5.880e-77
Identity = 163/426 (38.26%), Postives = 237/426 (55.63%), Query Frame = 0

Query:   94 SMDEEQ--SCPICFEMWTSAGAHRLVSLPCGHLFGRSCIERWLKEPKNKCCPQCKSTAKRKDIRNIFAKSLKALDTSEKEQVKKALLEEQYKRSKAEENEAKAVLQCQLMQAEMEKLRKQISEQANQTKSSVASSSRGDVAGPSGSGVQSTFMARNHLFSPMKATQQHSQQQRRPANPRRPALSDYGKSYKFQRTLQVSQK-DARVLAYDGTHMTMVVTKPSPNQLF-KGFGVLKVSSLEQRSSEYISIHSNTIRDAKFNSTGDRLLLTASVDKTLKLTSVLSNSMVQSYTCPNPVWACAWDESNCNYVYAGLQNGQCYVYDIRQSSV---ELSVIRPRLGVPRPIVSLAYVPPGNENSVLRCQGVLVGTLQGGWFIQNVNNENFIDHQLILPEGSCSGLYFDKTNRSCLLSQRPGKSNHRIIQSV 512
            SMDEE+  +C IC E WT+AG HRL +L CGHLFG  CI  WLK    KC PQC   A+  DI  ++A++L+ALDTSE+E++K +LL+EQ  R +AE   A+  LQ Q++  +  +L++++     Q    + S    ++  P GS  Q+  ++     SP       SQ Q +               Y FQ+T  VSQ  + R++AY      +V+++PSP   F  GFGV  +S+   +SS+YI +H   IR   F+S    LLL+AS+D T+KLTS+ +N++VQ+Y    PVW+C W     NY+YAGL NG   VYD+R +S    EL   + R     P+VSL+Y+P    ++     GVL GTL+   F +   + +   H L L  G C     + ++R CL++ RP K NH  I+SV
Sbjct:  278 SMDEEEGDTCTICLEQWTNAGDHRLSALRCGHLFGYRCISTWLKGQVRKC-PQCNKKARHSDIVVLYARTLRALDTSEQERMKSSLLKEQMLRKQAELESAQCRLQLQVLTDKCTRLQRRV-----QDLQKLTSHQSQNLQQPRGS--QAWVLS----CSP------SSQGQHK-------------HKYHFQKTFTVSQAGNCRIMAYCDALSCLVISQPSPQASFLPGFGVKMLSTANMKSSQYIPMHGKQIRGLAFSSYLRGLLLSASLDNTIKLTSLETNTVVQTYNAGRPVWSCCWCLDEANYIYAGLANGSILVYDVRNTSSHVQELVAQKARC----PLVSLSYMPRA-ASAAFPYGGVLAGTLEDASFWEQKMDFSHWPHVLPLEPGGCIDFQTENSSRHCLVTYRPDK-NHTTIRSV 666

The following BLAST results are available for this feature:

BLAST of TCONS_00064992-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00064992-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RFWD3	5.880e-77	38.26	E3 ubiquitin-protein ligase RFWD3 OS=Homo sapiens ...	[more]

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TCONS_00064992-protein (polypeptide) - C. hemisphaerica