TCONS_00065170-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00065170-protein
Unique NameTCONS_00065170-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length162

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00065170-protein ID=TCONS_00065170-protein|Name=TCONS_00065170-protein|organism=Clytia hemisphaerica|type=polypeptide|length=162bp
MMKVASILVFLAIAASTEGYGDPVLLRVRSVNTVYTSTYLIKKTPLNMHA
AKEACAKCGGFLATIDDLPEHHFLVHELQKLHIKSAWVGLNDKAYEKVFR
WDGSNLPGFKKWCPHEPNNFGNAEDCVELIADKKCLNDLGCAHARPYICE
INQSKVTSDVTV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_040861XLOC_040861Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00065170TCONS_00065170Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001304C-type_lectin-like
IPR016186C-type_lectin-like/link
IPR013087Znf_C2H2_type
IPR018378C-type_lectin_CS
IPR016187CTDL_fold
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001304C-type lectin-likeSMARTSM00034CLECT_2coord: 28..150
e-value: 7.8E-14
score: 62.0
IPR001304C-type lectin-likePFAMPF00059Lectin_Ccoord: 45..150
e-value: 1.2E-15
score: 58.0
IPR001304C-type lectin-likePROSITEPS50041C_TYPE_LECTIN_2coord: 34..150
score: 18.189
IPR016186C-type lectin-like/link domainGENE3D3.10.100.10coord: 29..159
e-value: 7.4E-29
score: 100.2
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 55..76
IPR018378C-type lectin, conserved sitePROSITEPS00615C_TYPE_LECTIN_1coord: 126..149
NoneNo IPR availableCDDcd00037CLECTcoord: 37..151
e-value: 3.94938E-26
score: 96.1497
IPR016187C-type lectin foldSUPERFAMILY56436C-type lectin-likecoord: 34..153

Blast
[Close]
BLAST of TCONS_00065170-protein vs. Swiss-Prot (Human)
Match: MRC2 (C-type mannose receptor 2 OS=Homo sapiens GN=MRC2 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 8.433e-16
Identity = 36/113 (31.86%), Postives = 60/113 (53.10%), Query Frame = 0 
Query:   39 YLIKKTPLNMHAAKEACAKCGGFLATIDDLPEHHFLVHELQKLHIKSAWVGLNDKAYEKVFRWDGSNLPGFKKWCPHEPNNFGNA-EDCVELIADKKCLNDLGCAHARPYICE 150
            Y ++    +   +K+AC + GG L +I  + E  F+  ++++  ++  W+GLND   +  F W   +L  F  W P EPNNF ++ EDCV +   +   ND  C  + P IC+
Sbjct:  394 YRLQAEKRSWQESKKACLRGGGDLVSIHSMAELEFITKQIKQ-EVEELWIGLNDLKLQMNFEWSDGSLVSFTHWHPFEPNNFRDSLEDCVTIWGPEGRWNDSPCNQSLPSICK 505
The following BLAST results are available for this feature:
BLAST of TCONS_00065170-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MRC28.433e-1631.86C-type mannose receptor 2 OS=Homo sapiens GN=MRC2 ... [more]
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