TCONS_00065201-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00065201-protein
Unique Name	TCONS_00065201-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	426

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00065201-protein ID=TCONS_00065201-protein|Name=TCONS_00065201-protein|organism=Clytia hemisphaerica|type=polypeptide|length=426bp
MFGVKSREQFTLKWQLKFIAMICFTGLLFLMKITVGQVTKSMALVADSFH
MITDFAALTIGYIALKCANSKTGTSQVLLSRFTFGWVRAEVLGGLINTVF
LLALCFSVMVHSLKRFITPEHISKPIPVLIVGGVSLLVNLLGLMMFRTTR
ENCLSICSSCFKSHDKTPEVEGISLMNGQQTAKARKRTYSHSRGHEVSWE
HEYQTPHSLNIRGVYLHILEHFLISIIVIMSALLMLHYEGETWIDYVDPA
FTLLVVATILYSTVPLFRETLILFMQSVPANIQVKDMEERLLKHIPEILS
VHELHVWQLGGDKVVASAHLLFKRPEDFRKTVNSVKSFFRREGIACMTFQ
PEFLPEEDVDGEQAADAMVMFSPDRCYFKCAKKDCQTLTCCDVSDDKDSI
TNTDSSPSSSECTFSPDRTSLTLLMS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_040878	XLOC_040878	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00065201	TCONS_00065201	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR027470	Cation_efflux_CTD
IPR002524	Cation_efflux

Vocabulary: **Molecular Function**
Term	Definition
GO:0008324	cation transmembrane transporter activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0006812	cation transport
GO:0055085	transmembrane transport

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006812	cation transport
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008324	cation transmembrane transporter activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027470	Cation efflux protein, cytoplasmic domain	GENE3D	3.30.70.1350		coord: 278..337 e-value: 8.7E-6 score: 25.5
None	No IPR available	GENE3D	1.20.1510.10		coord: 14..275 e-value: 6.2E-54 score: 182.1
None	No IPR available	SUPERFAMILY	161111	Cation efflux protein transmembrane domain-like	coord: 16..150 coord: 204..276
IPR002524	Cation efflux protein	TIGRFAM	TIGR01297	TIGR01297	coord: 18..328 e-value: 2.4E-54 score: 182.5
IPR002524	Cation efflux protein	PFAM	PF01545	Cation_efflux	coord: 19..271 e-value: 7.9E-42 score: 143.1

Blast

[Close]

BLAST of TCONS_00065201-protein vs. Swiss-Prot (Human)
Match: ZNT1 (Zinc transporter 1 OS=Homo sapiens GN=SLC30A1 PE=1 SV=3)

HSP 1 Score: 187.578 bits (475), Expect = 4.432e-54
Identity = 128/475 (26.95%), Postives = 218/475 (45.89%), Query Frame = 0

Query:   17 KFIAMICFTGLLFLMKITVGQVTKSMALVADSFHMITDFAALTIGYIALKCANSKTGTSQVLLSRFTFGWVRAEVLGGLINTVFLLALCFSVMVHSLKRFITPEHISKPIPVLIVGGVSLLVNLLGLMMF-------------------------------RTTRENCLSICSSCFKSHDKTPE----VEGISLMNGQQTAKARKRTYSHSRGHEVS-----------WEHEYQTPHSLNIRGVYLHILEHFLISIIVIMSALLM-----------------------------------LHYEGETWIDYVDPAFTLLVVATILYSTVPLFRETLILFMQSVPANIQVKDMEERLLKHIPEILSVHELHVWQLGGDKVVASAHLLFKRPEDFRKTVNSVKSFFRREGIACMTFQPEFLPEEDVDGEQAADAMVMFSPDRCYFKCAKKDCQTLTCCDVSDDKDSITNTDSSPSSS 410
            + + M+  T +  ++++ V +VT S+A+++DSFHM++D  AL +  +A + A     T      + TFGW+RAEV+G L+N +FL  LCF++++ +++RFI P  + +P+ VL VG   LLVN+LGL +F                               ++TR     I  +  +      E    V   S  NG +   A           EV             E E      LN+RGV+LH+L   L S+IV+++AL+                                    ++  G  W+ Y+DP   +++V  +LY+T PL +E+ ++ +Q+VP  I ++++ +  L+++  +  VHELHVWQL G +++A+AH+  + P  + +   ++K  F   GI   T QPEF           + + V+     C  +CA K      CC       S  + + +P+ S
Sbjct:   10 RLLCMLALTFMFMVLEVVVSRVTSSLAMLSDSFHMLSDVLALVVALVAERFARRTHATQ-----KNTFGWIRAEVMGALVNAIFLTGLCFAILLEAIERFIEPHEMQQPLVVLGVGVAGLLVNVLGLCLFHHHSGFSQDSGHGHSHGGHGHGHGLPKGPRVKSTRPGSSDINVAPGEQGPDQEETNTLVANTSNSNGLKLDPADPENPRSGDTVEVQVNGNLVREPDHMELEEDRAGQLNMRGVFLHVLGDALGSVIVVVNALVFYFSWKGCSEGDFCVNPCFPDPCKAFVEIINSTHASVYEAGPCWVLYLDPTLCVVMVCILLYTTYPLLKESALILLQTVPKQIDIRNLIKE-LRNVEGVEEVHELHVWQLAGSRIIATAHIKCEDPTSYMEVAKTIKDVFHNHGIHATTIQPEF-------ASVGSKSSVVPCELACRTQCALKQ-----CCGTLPQAPSGKDAEKTPAVS 466

The following BLAST results are available for this feature:

BLAST of TCONS_00065201-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00065201-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ZNT1	4.432e-54	26.95	Zinc transporter 1 OS=Homo sapiens GN=SLC30A1 PE=1...	[more]

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TCONS_00065201-protein (polypeptide) - C. hemisphaerica