TCONS_00065222-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00065222-protein
Unique Name	TCONS_00065222-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	361

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00065222-protein ID=TCONS_00065222-protein|Name=TCONS_00065222-protein|organism=Clytia hemisphaerica|type=polypeptide|length=361bp
MSGYTISVTDATKDGEIIKFTVQTKLDDNSDSESGKIVLRQYEDFEYLLH
VLTTKNDCNGVFVPILPPKPFVAPNQTDAKNKISNSVSQLVKGDEYAQDC
KRIAKFMQDLAAHPSFQNDENLKNFLTEEQAPARAAVKRGLLDSFINVVD
NARFHHFPDSDEEFQGWRDNTNTLLTHLKQLHMIKEKLLMIENGHSASYG
NLSKTFSNSNLMDIQQSKPLMRFIGQFADTLEDTMKHGQSSTFISEDTLG
TAIELYTRYMQACQTMLFRRTTKMVELDNAKKALAKAKPKNQEQLQQAKD
DAEKAFEEITEVMRKEYEDFNTKRIQFFQQSLEALAERKIEEHKTTSDLL
SKVIVELKAAV

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_040890	XLOC_040890	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00065222	TCONS_00065222	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001683	Phox
IPR015404	Vps5_C
IPR027267	AH/BAR-dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0035091	phosphatidylinositol binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0035091	phosphatidylinositol binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 288..315
None	No IPR available	GENE3D	1.20.1270.60		coord: 164..359 e-value: 9.0E-20 score: 70.9
IPR001683	Phox homologous domain	PFAM	PF00787	PX	coord: 6..128 e-value: 1.9E-8 score: 34.2
IPR001683	Phox homologous domain	GENE3D	3.30.1520.10		coord: 2..133 e-value: 1.3E-12 score: 47.2
IPR001683	Phox homologous domain	PROSITE	PS50195	PX	coord: 1..133 score: 11.763
IPR001683	Phox homologous domain	SUPERFAMILY	64268	PX domain	coord: 5..128
IPR015404	Sorting nexin Vps5-like, C-terminal	PFAM	PF09325	Vps5	coord: 142..304 e-value: 1.2E-8 score: 34.7
IPR027267	Arfaptin homology (AH) domain/BAR domain	SUPERFAMILY	103657	BAR/IMD domain-like	coord: 161..354

Blast

[Close]

BLAST of TCONS_00065222-protein vs. Swiss-Prot (Human)
Match: SNX6 (Sorting nexin-6 OS=Homo sapiens GN=SNX6 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 5.790e-22
Identity = 94/374 (25.13%), Postives = 169/374 (45.19%), Query Frame = 0

Query:    6 ISVTDATKDGEIIKFTVQTKLDDNSDSESGKIVLRQYEDFEYLLHVLTTKNDCNGVFVPILPPKP-FVAPNQTDAKNKISNSVSQLVKGD----------EYAQDCKRIAK----FMQDLAAHPSFQNDENLKNFLTEEQ-APARAAVKRGLLDSF----INVVDNARFHHFPDSDEEFQGWRDNTNTLLTHLKQLHMIKEKLLMIENGHSASYGNLSKTFSNSNLMDIQQSKPLMRFIGQFADTLEDTMKHGQSSTFISEDTLGTAIELYTRYMQACQTMLFRRTTKMVELDNAKKALAKAKPKNQEQLQQ--AKDDAEKAFEEITEVMRKEYEDFNTKRIQFFQQSLEALAERKIEEHKTTSDLLSKVIVEL 357
            + ++DA  + + +KFTV TK    +  ++   V+RQ+E+F +L        D  G  +P  PP+P F A  +     K+      + K +          EY    K+       F+  +AAHP  + D N   FL   Q    R   K+  L+ F    +   D        D D+ F+  R     LL +  ++     K   +   H ++  + ++  S+   +  Q S  + +F  + ++  + T K     +   +  L   ++ Y R  QA + +L+RR+  +V+ +NA KAL KA+ KN++ LQ   ++    + FE+I+E  ++E  DF T+R+  F+++L  LAE +++  K    LL   +  L
Sbjct:   34 VDISDALSERDKVKFTVHTKSSLPNFKQNEFSVVRQHEEFIWLHDSFVENEDYAGYIIPPAPPRPDFDASREK--LQKLGEGEGSMTKEEFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILRRDLNFHVFLEYNQDLSVRGKNKKEKLEDFFKNMVKSADGVIVSGVKDVDDFFEHER---TFLLEYHNRVKDASAKSDRMTRSHKSAADDYNRIGSSLYALGTQDSTDICKFFLKVSELFDKTRKIEARVSADEDLKLSDLLKYYLRESQAAKDLLYRRSRSLVDYENANKALDKARAKNKDVLQAETSQQLCCQKFEKISESAKQELIDFKTRRVAAFRKNLVELAELELKHAKGNLQLLQNCLAVL 402

The following BLAST results are available for this feature:

BLAST of TCONS_00065222-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00065222-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SNX6	5.790e-22	25.13	Sorting nexin-6 OS=Homo sapiens GN=SNX6 PE=1 SV=1	[more]

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TCONS_00065222-protein (polypeptide) - C. hemisphaerica