TCONS_00065229-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00065229-protein
Unique NameTCONS_00065229-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length241

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00065229-protein ID=TCONS_00065229-protein|Name=TCONS_00065229-protein|organism=Clytia hemisphaerica|type=polypeptide|length=241bp
MLPSVLVTGCNKGIGLEFIKQLVGKTSHLFATCRTPSNELSKLAEENSNL
HILHVEVTKDDDIFAAAEQVSHFVEDGGLHCLINNAGVVNYEHAKMENLT
SESLLNTYHINAVGPAMMVKAFLPLLRQAATNSSSTAMPCGVLNISSRTG
SIEDNGMGKLYGSRLSKVALNMLTKNLSIELKADNLIAVALNPGWVKTEN
GGENALITAEQSVHGMLSVYKGLTMKDSGAFLSYDGSTIPW
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_040891XLOC_040891Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00065229TCONS_00065229Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002347SDR_fam
IPR016040NAD(P)-bd_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002347Short-chain dehydrogenase/reductase SDRPRINTSPR00081GDHRDHcoord: 4..21
score: 36.89
coord: 163..182
score: 29.24
coord: 184..201
score: 22.36
coord: 77..88
score: 51.4
IPR002347Short-chain dehydrogenase/reductase SDRPFAMPF00106adh_shortcoord: 5..201
e-value: 3.2E-27
score: 95.2
NoneNo IPR availableGENE3D3.40.50.720coord: 3..241
e-value: 4.0E-40
score: 137.1
NoneNo IPR availableCDDcd05325carb_red_sniffer_like_SDR_ccoord: 5..241
e-value: 4.36229E-84
score: 251.831
IPR016040NAD(P)-binding domainSUPERFAMILY51735NAD(P)-binding Rossmann-fold domainscoord: 3..241

Blast
[Close]
BLAST of TCONS_00065229-protein vs. Swiss-Prot (Human)
Match: RDH16 (Retinol dehydrogenase 16 OS=Homo sapiens GN=RDH16 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 8.450e-17
Identity = 58/216 (26.85%), Postives = 98/216 (45.37%), Query Frame = 0 
Query:    5 VLVTGCNKGIGLEFIKQLVGKTSHLFATCRTPSNELSKLAEENSNLHILHVEVTKDDDIFAAAEQVSHFVEDGGLHCLINNAGVVNYEHAKMENLTSESLLNTYHINAVGPAMMVKAFLPLLRQAATNSSSTAMPCGVLNISSRTGSIEDNGMGKLYGSRLSKVALNMLTKNLSIELKADNLIAVALNPGWVKTENGGENALITAEQSVHGMLSVY 220
            V +TGC+ G G    +QL  +   + A C T         + +  L  + ++VTK + + AAA+ V   V D GL  L+NNAG ++   A  E LT +  +    +N +G   +  + LPL+R+A            V+N+SS  G +   G G      +SK  +   + +L  EL    +    + PG+ KT      A+ + E+ +   L ++
Sbjct:   32 VFITGCDSGFGKLLARQLDARGLRVLAACLTEKGAEQLRGQTSDRLETVTLDVTKTESVAAAAQWVKECVRDKGLWGLVNNAG-ISLPTAPNELLTKQDFVTILDVNLLGVIDVTLSLLPLVRRARGR---------VVNVSSVMGRVSLFGGGYC----ISKYGVEAFSDSLRRELSYFGVKVAMIEPGYFKT------AVTSKERFLKSFLEIW 227
The following BLAST results are available for this feature:
BLAST of TCONS_00065229-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RDH168.450e-1726.85Retinol dehydrogenase 16 OS=Homo sapiens GN=RDH16 ... [more]
back to top