TCONS_00065256-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00065256-protein
Unique NameTCONS_00065256-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length522

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00065256-protein ID=TCONS_00065256-protein|Name=TCONS_00065256-protein|organism=Clytia hemisphaerica|type=polypeptide|length=522bp
GKASKTTSKMVATKTLPLVLGSLLGIMLAILVVVLFLFYKKRKESIEFSI
PLEKMTRGLKSSLKRRSTSSKNSKSSNDSIHIKPQGTPILRDTQFWVPEV
YNSIIQPSSAAPIRKTSRLQSTLDREIYSKAHDTSYLQAAQPEVFDGKNE
KRPSTISMMRRNTSSLKRGDIARRLASEQGSRGMLNFSIQYKQATAKLTI
IILKAEGLPVRKDGEFCDPFVDIQVSPYYKRRMHSEVHQKTQNPVFNQSF
DSEVPPYEVRGQTIHFTVLDFSQQLAHEPIGSVAFKMDSLDRDAFNAGKE
FTLWKKIDKDALESGDRLDGKREYPMEMELDRTAMLLLLSVNYLKIAERL
TVTVNKARNLLLVDRKGKLDGMSCIIPPIRTPISKRKKSRKNGKIGEIEH
EDLENNNENGKRSVLDHPYVQVTLKHFGRVLKKLRTGVVKHETNPVFNKT
LLFDVPKHLVDSVSLTVKLRHHNELGRDRTFAILTVGKNAVGSGSEQWTD
MLNSSETVQRWHRLIPIEPVDD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_040916XLOC_040916Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00065256TCONS_00065256Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000008C2_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000008C2 domainSMARTSM00239C2_3ccoord: 197..299
e-value: 4.0E-14
score: 62.9
coord: 349..510
e-value: 2.1E-8
score: 43.9
IPR000008C2 domainGENE3D2.60.40.150coord: 171..323
e-value: 2.1E-23
score: 82.1
IPR000008C2 domainGENE3D2.60.40.150coord: 335..516
e-value: 4.6E-19
score: 68.0
IPR000008C2 domainPFAMPF00168C2coord: 197..293
e-value: 5.0E-14
score: 52.3
coord: 349..488
e-value: 6.9E-8
score: 32.6
IPR000008C2 domainPROSITEPS50004C2coord: 197..284
score: 13.372
IPR000008C2 domainPROSITEPS50004C2coord: 398..490
score: 9.938
IPR000008C2 domainSUPERFAMILY49562C2 domain (Calcium/lipid-binding domain, CaLB)coord: 178..294
IPR000008C2 domainSUPERFAMILY49562C2 domain (Calcium/lipid-binding domain, CaLB)coord: 337..368
coord: 416..507
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 59..85
NoneNo IPR availableCDDcd00276C2B_Synaptotagmincoord: 337..514
e-value: 3.59277E-32
score: 118.84

Blast
[Close]
BLAST of TCONS_00065256-protein vs. Swiss-Prot (Human)
Match: SYT3 (Synaptotagmin-3 OS=Homo sapiens GN=SYT3 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.386e-35
Identity = 98/335 (29.25%), Postives = 156/335 (46.57%), Query Frame = 0 
Query:  183 GMLNFSIQYKQATAKLTIIILKAEGLPVRKDGEFCDPFVDIQVSPYYKRRMHSEVHQKTQNPVFNQSFDSEVPPYEVRGQTIHFTVLDFSQQLAHEPIGSVAFKMDSLDRDAFNAGKEFTLWKKIDKDALESGDRLDGKREYPMEMELDRTAMLLLLSVNYLKIAERLTVTVNKARNLLLVDRKGKLDGMSCIIPPIRTPISKRKKSRKNGKIGEIEHEDLENNNENGKRSVLDHPYVQVTLKHFGRVLKKLRTGVVKHETNPVFNKTLLFDVPKHLVDSVSLTVKLRHHNELGRDRTFAILTVGKNAVGS-GSEQWTDML-NSSETVQRWHRLI 515
            G ++F+++Y   + +L + IL+A  LP +    F DP+V I + P  K++  ++VH+KT NPVFN++F   VP  E+  + +HF+V DF +   H+ IG V   +D+L   A     +  LW+ I +   E  D  +                 L  S+ YL  A RLTVT+ KA NL  +D  G  D                                               PYV+ +L   GR LKK +T + K+  NP +N+ L+FDV    V++V L++ +  ++ +G +    +  VG +A    G E W +ML N  + V+ WH+L+
Sbjct:  301 GRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPVFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVV--LDNLLELA-EQPPDRPLWRDIVEGGSEKADLGE-----------------LNFSLCYLPTAGRLTVTIIKASNLKAMDLTGFSD-----------------------------------------------PYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPDAADPHGREHWAEMLANPRKPVEHWHQLV 568
The following BLAST results are available for this feature:
BLAST of TCONS_00065256-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SYT31.386e-3529.25Synaptotagmin-3 OS=Homo sapiens GN=SYT3 PE=2 SV=1[more]
back to top