TCONS_00065293-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00065293-protein
Unique NameTCONS_00065293-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length333

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00065293-protein ID=TCONS_00065293-protein|Name=TCONS_00065293-protein|organism=Clytia hemisphaerica|type=polypeptide|length=333bp
MSGRNVINAGRKARSLSRSRLSSSKKLIHGQSSELKVQPIDKLLIANRGE
IACRIMQSAKRMGIQSVTCYSDADQKSLHANMADEAFHIGPSPAVDSYLR
MEKIINVAKKSGAQAVHPGYGFLSEKPEFANLCEDEGIIFVGPPSSAIRD
MGIKSTSKYIMESAGVPVIKGYHGEDQSIETLKSEAEKIGYPVMLKAVRG
GGGKGMRIVTKPEDFEAQLESAKNESLKAFDDDKFLVEKFVERPRHVEVQ
VFADRYGNTVYLFERDCSVQRRHQKIIEEAPAPGLSDQVRKEIGEAAVRA
AKAVNYVGAGTVEFIMDKEQNFFFMEMNTRLQV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_040936XLOC_040936Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00065293TCONS_00065293Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005481BC-like_N
IPR013815ATP_grasp_subdomain_1
IPR005479CbamoylP_synth_lsu-like_ATP-bd
IPR011761ATP-grasp
IPR011764Biotin_carboxylation_dom
IPR016185PreATP-grasp_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0005524ATP binding
GO:0046872metal ion binding
GO:0004075biotin carboxylase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
molecular_function GO:0004075 biotin carboxylase activity
molecular_function GO:0003824 catalytic activity
molecular_function GO:0046872 metal ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005481Biotin carboxylase-like, N-terminal domainPFAMPF00289Biotin_carb_Ncoord: 40..148
e-value: 1.2E-44
score: 151.2
NoneNo IPR availableGENE3D3.40.50.20coord: 39..161
e-value: 2.5E-52
score: 175.9
NoneNo IPR availableGENE3D3.30.470.20coord: 248..333
e-value: 8.5E-45
score: 152.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28
NoneNo IPR availableSUPERFAMILY56059Glutathione synthetase ATP-binding domain-likecoord: 121..332
IPR013815ATP-grasp fold, subdomain 1GENE3D3.30.1490.20coord: 162..247
e-value: 3.4E-22
score: 78.0
IPR005479Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domainPFAMPF02786CPSase_L_D2coord: 154..333
e-value: 3.0E-62
score: 209.8
IPR005479Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domainPROSITEPS00867CPSASE_2coord: 324..331
IPR011761ATP-grasp foldPROSITEPS50975ATP_GRASPcoord: 158..330
score: 35.274
IPR011764Biotin carboxylation domainPROSITEPS50979BCcoord: 39..333
score: 31.121
IPR016185Pre-ATP-grasp domainSUPERFAMILY52440PreATP-grasp domaincoord: 36..151

Blast
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BLAST of TCONS_00065293-protein vs. Swiss-Prot (Human)
Match: MCCA (Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial OS=Homo sapiens GN=MCCC1 PE=1 SV=3)

HSP 1 Score: 461.07 bits (1185), Expect = 1.169e-158
Identity = 213/294 (72.45%), Postives = 252/294 (85.71%), Query Frame = 0 
Query:   40 IDKLLIANRGEIACRIMQSAKRMGIQSVTCYSDADQKSLHANMADEAFHIGPSPAVDSYLRMEKIINVAKKSGAQAVHPGYGFLSEKPEFANLCEDEGIIFVGPPSSAIRDMGIKSTSKYIMESAGVPVIKGYHGEDQSIETLKSEAEKIGYPVMLKAVRGGGGKGMRIVTKPEDFEAQLESAKNESLKAFDDDKFLVEKFVERPRHVEVQVFADRYGNTVYLFERDCSVQRRHQKIIEEAPAPGLSDQVRKEIGEAAVRAAKAVNYVGAGTVEFIMDKEQNFFFMEMNTRLQV 333
            I K+LIANRGEIACR+M++AK++G+Q+V  YS+AD+ S+H +MADEA+ IGP+P+  SYL MEKII VAK S AQA+HPG GFLSE  EFA LC+ EGIIF+GPP SAIRDMGIKSTSK IM +AGVPV++GYHGEDQS + LK  A +IGYPVM+KAVRGGGGKGMRIV   ++F+ QLESA+ E+ K+F+DD  L+EKFV+ PRHVEVQVF D +GN VYLFERDCSVQRRHQKIIEEAPAPG+  +VRK++GEAAVRAAKAVNYVGAGTVEFIMD + NF FMEMNTRLQV
Sbjct:   49 ITKVLIANRGEIACRVMRTAKKLGVQTVAVYSEADRNSMHVDMADEAYSIGPAPSQQSYLSMEKIIQVAKTSAAQAIHPGCGFLSENMEFAELCKQEGIIFIGPPPSAIRDMGIKSTSKSIMAAAGVPVVEGYHGEDQSDQCLKEHARRIGYPVMIKAVRGGGGKGMRIVRSEQEFQEQLESARREAKKSFNDDAMLIEKFVDTPRHVEVQVFGDHHGNAVYLFERDCSVQRRHQKIIEEAPAPGIKSEVRKKLGEAAVRAAKAVNYVGAGTVEFIMDSKHNFCFMEMNTRLQV 342
The following BLAST results are available for this feature:
BLAST of TCONS_00065293-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MCCA1.169e-15872.45Methylcrotonoyl-CoA carboxylase subunit alpha, mit... [more]
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