TCONS_00065307-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00065307-protein
Unique NameTCONS_00065307-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length313

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00065307-protein ID=TCONS_00065307-protein|Name=TCONS_00065307-protein|organism=Clytia hemisphaerica|type=polypeptide|length=313bp
GVQYFQCKPNHGIFTPLTLVKKFDVDYLLVSPSPPASPVPANTSASFDNV
AMFGLTLGEKVIVAGQKTGFVRYRGPTKFSPGTWVGVELEDPVGKNDGSV
GDFRYFRCEPDRGIFAPLPQIQRIEEVIEEECSSIEIPNTIKKFQMKKRI
EGDGEKKKIFLKLDLKSITPQEDIEEENDRDSLEESEQKSNEKRKHSRIN
PGVSANIQQLSQPKRNHQKLDRTLGAQINFTLKTGMSVYLNGQLGLVRFI
GRVEFAKGVWLGVELRKPYGKNDGSVEGRRYFTCEQNYGLMTRPSRATCR
GINCEQLIDLKFR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_040944XLOC_040944Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00065307TCONS_00065307Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000938CAP-Gly_domain
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000938CAP Gly-rich domainSMARTSM01052CAP_GLY_2coord: 57..122
e-value: 4.6E-27
score: 105.9
coord: 234..298
e-value: 5.0E-24
score: 95.8
IPR000938CAP Gly-rich domainGENE3D2.30.30.190coord: 1..23
e-value: 5.8E-4
score: 19.0
coord: 233..299
e-value: 1.1E-22
score: 79.0
IPR000938CAP Gly-rich domainGENE3D2.30.30.190coord: 47..137
e-value: 1.7E-25
score: 88.2
IPR000938CAP Gly-rich domainPFAMPF01302CAP_GLYcoord: 241..296
e-value: 1.5E-21
score: 76.1
coord: 58..119
e-value: 2.2E-21
score: 75.6
IPR000938CAP Gly-rich domainPROSITEPS00845CAP_GLY_1coord: 251..282
IPR000938CAP Gly-rich domainPROSITEPS00845CAP_GLY_1coord: 75..106
IPR000938CAP Gly-rich domainPROSITEPS50245CAP_GLY_2coord: 75..117
score: 17.035
IPR000938CAP Gly-rich domainPROSITEPS50245CAP_GLY_2coord: 251..293
score: 17.174
IPR000938CAP Gly-rich domainSUPERFAMILY74924Cap-Gly domaincoord: 1..42
IPR000938CAP Gly-rich domainSUPERFAMILY74924Cap-Gly domaincoord: 51..135
IPR000938CAP Gly-rich domainSUPERFAMILY74924Cap-Gly domaincoord: 229..299
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 172..218

Blast
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BLAST of TCONS_00065307-protein vs. Swiss-Prot (Human)
Match: CLIP4 (CAP-Gly domain-containing linker protein 4 OS=Homo sapiens GN=CLIP4 PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.739e-46
Identity = 92/255 (36.08%), Postives = 139/255 (54.51%), Query Frame = 0 
Query:   55 LTLGEKVIVAGQKTGFVRYRGPTKFSPGTWVGVELEDPVGKNDGSVGDFRYFRCEPDRGIFAPLPQIQRIEEVIEEECSSIEIPNTIKKFQMKKRIEGDGEKKKIFLKLDLKSITPQEDIEEENDRDSLEESEQKSNEKRKHSRINPGVSANIQQLSQPKRNHQKLDRTLGAQINFTLKTGMSVYLNGQLGLVRFIGRVEFAKGVWLGVELRKPYGKNDGSVEGRRYFTCEQNYGLMTRPSRATCRGINCEQLID 309
            L LGE+V+V GQ+ G +R+ G T F+PG W G+ELE P GKNDGSVG  +YF C P  GIFAP  ++QR+ + ++          T+ +    K+       ++ F      S T     +E N R++  +S+         +    G+  +++        H+      G+Q+  T         + ++G VR++G  +FA G+WLG+ELR   GKNDGSV  +RYFTC+ N+G++ RPSR T RGIN  +L+D
Sbjct:  485 LRLGERVLVVGQRLGTIRFFGTTNFAPGYWYGIELEKPHGKNDGSVGGVQYFSCSPRYGIFAPPSRVQRVTDSLD----------TLSEISSNKQNHSYPGFRRSF------STTSASSQKEINRRNAFSKSKAALRRSWSSTPTAGGIEGSVKL-------HE------GSQVLLT--------SSNEMGTVRYVGPTDFASGIWLGLELRSAKGKNDGSVGDKRYFTCKPNHGVLVRPSRVTYRGINGSKLVD 702

HSP 2 Score: 148.673 bits (374), Expect = 3.676e-40
Identity = 99/297 (33.33%), Postives = 149/297 (50.17%), Query Frame = 0 
Query:   36 ASPVPANTSAS----FDNV---AMF---GLTLGEKVIVAGQKTGFVRYRGPTKFSPGTWVGVELEDPVGKNDGSVGDFRYFRCEPDRGIFAPLPQIQ----RIEEVIEEECSSIEIP----NTIKKFQMKKRIE-GDGEKKKIFLKLDLKSITPQEDIEEENDRD-----------SLEESEQKSNEKRKHSRINPGVSANIQQLSQPKRNHQKLDRTLGAQINFT-----LKTGMSVYLNGQ-LGLVRFIGRVEFAKGVWLGVELRKPYGKNDGSVEGRRYFTCEQNYGLMTRPSR 296
            A P+  N S +    +D+V   AM    GL LG++V++AGQK G +R+ G T+F+ G W G+EL++P GKN+GSVG  +YF+C P  GIFAPL +I     R + +     +   +P      I    +  ++  G    KK        S+ P E+++   ++D           S    E + +  +K + I+       +  S   R    L+ +  +  N +     L+ G  V + GQ LG +RF G   FA G W G+EL KP+GKNDGSV G +YF+C   YG+   PSR
Sbjct:  254 AVPLSCNISKAMLPNYDHVTGKAMLTSLGLKLGDRVVIAGQKVGTLRFCGTTEFASGQWAGIELDEPEGKNNGSVGKVQYFKCAPKYGIFAPLSKISKAKGRRKNITHTPSTKAAVPLIRSQKIDVAHVTSKVNTGLMTSKKDSASESTLSLPPGEELKTVTEKDVALLGSVSSCSSTSSLEHRQSYPKKQNAISSNKKTMSKSPSLSSRASAGLNSSATSTANNSRCEGELRLGERVLVVGQRLGTIRFFGTTNFAPGYWYGIELEKPHGKNDGSVGGVQYFSCSPRYGIFAPPSR 550
The following BLAST results are available for this feature:
BLAST of TCONS_00065307-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CLIP41.739e-4636.08CAP-Gly domain-containing linker protein 4 OS=Homo... [more]
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