TCONS_00066033-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00066033-protein
Unique NameTCONS_00066033-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length154

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00066033-protein ID=TCONS_00066033-protein|Name=TCONS_00066033-protein|organism=Clytia hemisphaerica|type=polypeptide|length=154bp
MAAGLSAYRDQHFKGTRNELERKLEGSNTLYVGNLSFFTTEEQIYELFSK
SGDVKKIVMGLDRVRKTPCGFCFVEYYFRSGAEDSVRYVNGTRLDGRIVR
TDWDAGFEEGRQYGRGRSGGQVRDEYRTDFDDERGGFGRLYQERNKGNND
MMID
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_041354XLOC_041354Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00066033TCONS_00066033Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR034148NCBP2_RRM
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 29..102
e-value: 5.7E-19
score: 79.0
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 30..99
e-value: 8.9E-15
score: 54.2
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 28..106
score: 15.136
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 24..137
NoneNo IPR availableGENE3D3.30.70.330coord: 7..124
e-value: 6.2E-23
score: 80.7
IPR034148NCBP2, RNA recognition motifCDDcd12240RRM_NCBP2coord: 30..107
e-value: 3.69357E-50
score: 156.553

Blast
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BLAST of TCONS_00066033-protein vs. Swiss-Prot (Human)
Match: NCBP2 (Nuclear cap-binding protein subunit 2 OS=Homo sapiens GN=NCBP2 PE=1 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 6.714e-75
Identity = 103/140 (73.57%), Postives = 123/140 (87.86%), Query Frame = 0 
Query:    5 LSAYRDQHFKGTRNELERKLEGSNTLYVGNLSFFTTEEQIYELFSKSGDVKKIVMGLDRVRKTPCGFCFVEYYFRSGAEDSVRYVNGTRLDGRIVRTDWDAGFEEGRQYGRGRSGGQVRDEYRTDFDDERGGFGRLYQER 144
            LS YRDQHF+G   E E+ L+ S TLYVGNLSF+TTEEQIYELFSKSGD+KKI+MGLD+++KT CGFCFVEYY R+ AE+++RY+NGTRLD RI+RTDWDAGF+EGRQYGRGRSGGQVRDEYR D+D  RGG+G+L Q +
Sbjct:   17 LSQYRDQHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKEGRQYGRGRSGGQVRDEYRQDYDAGRGGYGKLAQNQ 156
The following BLAST results are available for this feature:
BLAST of TCONS_00066033-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NCBP26.714e-7573.57Nuclear cap-binding protein subunit 2 OS=Homo sapi... [more]
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