TCONS_00066169-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00066169-protein
Unique NameTCONS_00066169-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length207

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00066169-protein ID=TCONS_00066169-protein|Name=TCONS_00066169-protein|organism=Clytia hemisphaerica|type=polypeptide|length=207bp
FQQRWRIILFQLPLLGKKRLALSSVSYKIHVLSNAVIAIITCIFIFHFIA
IKYKKKMSNNNNNTNENNYIQKLQETIEKNTHNDQQDEPEVHILDENDGQ
LLFCEQERLDQSSPELWPETIPGVSEFTASSLFNSPPKPVLNTTMSQLKD
SKLTLEDLEMLQEFGNLSLIQLMEKFHNLKNQAYQVGLEESREMTRGRYL
NVLGKKK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_041417XLOC_041417Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00066169TCONS_00066169Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR018737DREAM_LIN52
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
GO:0007049cell cycle
Vocabulary: Cellular Component
TermDefinition
GO:0070176DRM complex
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007049 cell cycle
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0070176 DRM complex
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018737Protein LIN52PFAMPF10044LIN52coord: 106..203
e-value: 1.7E-28
score: 99.0

Blast
[Close]
BLAST of TCONS_00066169-protein vs. Swiss-Prot (Human)
Match: LIN52 (Protein lin-52 homolog OS=Homo sapiens GN=LIN52 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.134e-27
Identity = 50/104 (48.08%), Postives = 74/104 (71.15%), Query Frame = 0 
Query:  107 ERLDQSSPELWPETIPGVSEFTAS---SLFNSPPKPVLNTTMSQLKDSKLTLEDLEMLQEFGNLSLIQLMEKFHNLKNQAYQVGLEESREMTRGRYLNVLGKKK 207
            E+LD++SP+LWPE +PGV+EF AS    + +SPPK +          +++  +D++ML+E G+L+   LMEK   L+N AYQ+GL+ESREMTRG++LN+L K K
Sbjct:   22 EKLDRASPDLWPEQLPGVAEFAASFKSPITSSPPKWM----------AEIERDDIDMLKELGSLTTANLMEKVRGLQNLAYQLGLDESREMTRGKFLNILEKPK 115
The following BLAST results are available for this feature:
BLAST of TCONS_00066169-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LIN521.134e-2748.08Protein lin-52 homolog OS=Homo sapiens GN=LIN52 PE... [more]
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