TCONS_00066702-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00066702-protein
Unique Name	TCONS_00066702-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	791

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00066702-protein ID=TCONS_00066702-protein|Name=TCONS_00066702-protein|organism=Clytia hemisphaerica|type=polypeptide|length=791bp
MLKFAKATDRRDRFSAASEKSTETESGQIVYRKISNNKNPESEKLSITAT
TTSYITDDSQTGELEKDFSIDDDSLKPGSDTDSAFSVEQIPTEELLYILG
PYRLYSTINEEESIDQLNNIDYNENVIISDIKLSRRQQHSRENSFEYFPP
KTTCYAVGGKNKPKKKTDLNFQLKFDKPNKQKTKSESSDLSPIDVSENYA
GTSNEVKKEPKKKSSGIKKTPSFKDRIISPLMKKRFNKRSASDSKLSKIS
KSIESEESIQRSATVGNTSNIARSPIDNNTESNFKRFDDSRKHINRQTVK
NRHPSSQSSTKSSNKSTESFDESLSKNLTINRLVDENNDTVFEDQSNLTH
SDCSFSESDINDMNGHRQQRQKYYRKKVNSPHPNTPLRTASPGSSVDSQY
GGSTSSLSTVSYQSISTTDVSCLPDKLLIRIFTYLDTSDVCRLSRVCRRW
SELYLSEKLWEHIKVTNMTSLDIDSTLNVMLQRLAYTTSCLNIRQMKLDG
CKELTDEGIQTMALRCPELRALEIASCDQVTARGVYNVLVNCPNLAFLNL
SGCEGVSSFSNCSDIISSPFSFGELKYLDLSSCSCFTDSDIEILLGRAPS
LEYLYLRLCDSISNIGIEAIARLCPNLKEISLNDCVNITDHGVLKLLDSC
HNLRYVSLAKCPITNMVLEQIASSPNNLLRHLNLYDCEYITDIAIMKLSA
SCPRLRSLDIGKCRKLTDASLYGLSRCTLLRRLNLKGCCKVTDAGLRKLA
TICKNLRHLDVRDCLFSPETYEYVRLRCPLCDIQRSYIHEC

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_041708	XLOC_041708	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00066702	TCONS_00066702	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001810	F-box_dom
IPR006553	Leu-rich_rpt_Cys-con_subtyp
IPR032675	L_dom-like
IPR001611	Leu-rich_rpt

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	SMART	SM00256	fbox_2	coord: 423..463 e-value: 1.3E-7 score: 41.3
IPR001810	F-box domain	PFAM	PF12937	F-box-like	coord: 421..464 e-value: 3.9E-12 score: 45.8
IPR001810	F-box domain	PROSITE	PS50181	FBOX	coord: 417..463 score: 15.856
IPR001810	F-box domain	SUPERFAMILY	81383	F-box domain	coord: 421..460
IPR006553	Leucine-rich repeat, cysteine-containing subtype	SMART	SM00367	LRR_CC_2	coord: 650..674 e-value: 1.1 score: 18.2 coord: 542..568 e-value: 100.0 score: 6.7 coord: 702..727 e-value: 1.5E-5 score: 34.4 coord: 598..623 e-value: 0.023 score: 23.9 coord: 676..701 e-value: 0.051 score: 22.7 coord: 516..541 e-value: 0.015 score: 24.5 coord: 490..515 e-value: 17.0 score: 12.8 coord: 624..649 e-value: 5.8E-6 score: 35.8 coord: 572..597 e-value: 0.14 score: 21.3 coord: 728..752 e-value: 2.0 score: 17.4
IPR032675	Leucine-rich repeat domain, L domain-like	GENE3D	3.80.10.10		coord: 654..784 e-value: 1.2E-21 score: 76.3 coord: 412..653 e-value: 4.0E-45 score: 153.3
IPR001611	Leucine-rich repeat	PFAM	PF13516	LRR_6	coord: 727..750 e-value: 0.013 score: 15.4 coord: 599..621 e-value: 0.84 score: 9.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 377..401
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..45
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 168..323
None	No IPR available	SUPERFAMILY	52047	RNI-like	coord: 451..770

Blast

[Close]

BLAST of TCONS_00066702-protein vs. Swiss-Prot (Human)
Match: FBXL7 (F-box/LRR-repeat protein 7 OS=Homo sapiens GN=FBXL7 PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 6.479e-68
Identity = 133/372 (35.75%), Postives = 220/372 (59.14%), Query Frame = 0

Query:  423 LPDKLLIRIFTYLDTSDVCRLSRVCRRWSELYLSEKLWEHIKVTNMTSLDIDSTLNVMLQRLAYTTS--CLNIRQMKLDGCKELTDEGIQTMALRCPELRALEIASCDQVTARGVYNVLVNCPNLAFLNLSGCEGVS--SFSNCSDIISSPFSFGE--LKYLDLSSCSCFTDSDIEILLGRAPSLEYLYLRLCDSISNIGIEAIARLCPNLKEISLNDCVNITDHGVLKLLDSCHNLRYVSLAKCP-ITNMVLEQIASSPNNLLRHLNLYDCEYITDIAIMKLSASCPRLRSLDIGKCRKLTDASLYGLS-RCTLLRRLNLKGCCKVTDAGLRKLATICKNLRHLDVRDCLFSPETYEYVRLRCPLCDIQRS 786
            LPD  +++IF++L T+ +CR +RVCRRW  L    +LW  I++T  T +++D  L V+ +RL   T   CL +  + + GC+ LTD G+ T+A  CPELR LE++ C  ++   V++V+  CPNL  L++SGC  V+  S +  + I  SP    +  ++YLD++ C    D  +  +      L +LYLR C  +++ G+  +   C ++KE+S++DC  ++D G+ ++      LRY+S+A C  +T++ +  +A   +  LR+LN   CE ITD  +  L+ +C +L+SLDIGKC  ++D  L  L+  C  L+RL+LK C  +T  GL+ +A  C +L+ L+V+DC  S E   +V+  C  C I+ +
Sbjct:  117 LPDHSMVQIFSFLPTNQLCRCARVCRRWYNLAWDPRLWRTIRLTGET-INVDRALKVLTRRLCQDTPNVCLMLETVTVSGCRRLTDRGLYTIAQCCPELRRLEVSGCYNISNEAVFDVVSLCPNLEHLDVSGCSKVTCISLTREASIKLSPLHGKQISIRYLDMTDCFVLEDEGLHTIAAHCTQLTHLYLRRCVRLTDEGLRYLVIYCASIKELSVSDCRFVSDFGLREIAKLESRLRYLSIAHCGRVTDVGIRYVAKYCSK-LRYLNARGCEGITDHGVEYLAKNCTKLKSLDIGKCPLVSDTGLECLALNCFNLKRLSLKSCESITGQGLQIVAANCFDLQTLNVQDCEVSVEALRFVKRHCKRCVIEHT 486

The following BLAST results are available for this feature:

BLAST of TCONS_00066702-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00066702-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
FBXL7	6.479e-68	35.75	F-box/LRR-repeat protein 7 OS=Homo sapiens GN=FBXL...	[more]

You are here

TCONS_00066702-protein (polypeptide) - C. hemisphaerica