TCONS_00066702 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066702
Unique NameTCONS_00066702
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3022

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066702 ID=TCONS_00066702|Name=TCONS_00066702|organism=Clytia hemisphaerica|type=transcript|length=3022bp
CTATACTCTGTTTTTAATGCTCtgtcattttgttttcttttagcaGTCGA
TTAAATGAAACAGAGAAAGGAAGTACATAAAAAGCTGACCAAAACTGCAA
TTTGATACCCACTTGAAGTTTGAATCAATTGGTTTTTGAAGGCTACTCGA
TTTGTCATTCGAAAAAGGGCTGTCTTCATGAGTCTTCATGTTGTTGTTAT
TGAAAGCAATAAAAACGTAATTTGACCAAACTATTTTGTTCGTCGTTGAG
AAAATGTTGAAGTTTGCAAAAGCTACTGACAGGAGAGatCGCTTCTCAGC
TGCTTCCGAAAAATCGACAGAAACCGAAAGTGGACAAATCGTATACCGTA
AAATATCGAACAACAAAAACcctgaatctgaaaaattaTCGATAACAGCC
ACGACAACTTCTTATATCACCGACGACTCCCAGACTGGTGAATTGgagaa
agatttttcaataGATGATGATTCTTTGAAGCCAGGATCAGATACTGACT
CAGCATTTTCTGTTGAGCAAATCCCTACCGAAGAGCTTTTATACATTCTT
GGTCCATATCGTCTGTACAGTACTATTAACGAGGAAGAGAGCATCGATCA
ACTCAATAATATCGATTACAACGAGAATGTAATTATATCGGATATCAAAT
TATCGAGACGCCAACAACATAGCCGAGAAAATAGTTTCGAGTATTTTCCA
CCTAAAACCACATGTTACGCTGTGGGTggtaaaaacaaaccaaaaaagaa
aacagactTAAATTTCCAACTGAAATTTGATAAAcctaacaaacaaaaaa
caaaatccGAAAGTTCCGATCTTAGCCCGATTGATGTTTCCGAAAATTAC
GCTGGAACTTCGAATGAAGTGAAAAAAGAACCAAAGAAGAAATCCAGTGG
AATAAAGAAAACACCCTCGTTTAAGGACCGCATTATTTCACCTTTGATGA
AAAAAAGATTCAATAAAAGATCAGCAAGCGATTCGAAATTatcgaaaatt
tccaaatcgATTGAGTCGGAGGAATCGATACAACGAAGTGCAACTGTAGG
GAACACAAGCAATATTGCTAGATCACCAATCGATAATAACACAGAATCGA
ATTTCAAACGATTTGACGATTCTCGAAAACATATCAATCGACAAACTGTT
AAAAATCGACATCCTAGTAGTCAATCATCGACAAAATCTTCGAACAAATC
AACCGAAAGTTTTGACGAAAGTTTATCAAAGAACCTGACAATAAATAGAC
TTGTGGATGAAAACAACGATACAGTTTTCGAAGATCAATCCAACTTAACG
CATAGCGATTGCAGTTTTTCGGAAAGCGATATCAACGATATGAACGGGCA
CCGACAACAACGTCAGAAATATTACCGTAAGAAGGTAAATTCACCGCATC
CCAATACTCCTTTGCGGACGGCGTCTCCAGGCTCTTCAGTCGATTCCCAG
TACGGTGGAAGTACATCAAGTTTATCAACGGTCAGTTATCAATCAATTAG
CACCACGGATGTGTCCTGCTTACCTGATAAATTGCTCATCCGTATCTTCA
CATATCTCGATACAAGTGACGTATgccgtttatcaagagtttgTCGCAGG
TGGAGCGAATtatatttatcagaaaaactATGGGAACATATCAAAGTTAC
GAACATGACTAGTCTGGATATTGATTCGACATTGAATGTAATGTTACAGA
GGCTTGCGTATACGACTTCTTGCTTAAATATTCGTCAAATGAAACTAGAT
GGATGTAAGGAGCTCACAGATGAAGGAATTCAAACTATGGCTTTAAGATG
TCCCGAACTTCGCGCTCTTGAAATTGCATCATGTGATCAAGTCACGGCCC
GTGGGGTATATAATGTACTTGTAAACTGCCCTAACTTAGCATTCCTAAAC
TTATCAGGCTGTGAAGGCGTTTCGAGTTTCTCAAACTGTTCTGATATCAT
AAGTTCACCGTTCAGTTTTGGCGAGTTGAAATATTTGGATTTGAGCTCAT
GCTCTTGTTTCACTGATAGCGATATTGAAATTTTACTCGGACGAGCTCCT
TCACTCGAATATCTTTATTTACGACTCTGCGATTCCATTTCTAACATTGG
TATTGAAGCAATAGCTAGACTGTGTCCTAATTTAAAGGAGATTAGTCTTA
ACGATTGTGTTAATATCACTGACCATGGCGTGTTGAAGTTACTAGATTCC
TGTCATAATTTACGATATGTCAGTCTCGCAAAATGTCCCATTACAAATAT
GGTTTTGGAACAAATTGCATCATCGCCAAATAATTTATTGAGACATTTAA
ACCTTTACGATTGTGAATATATTACTGATATTGCTATCATGAAATTGTCT
GCATCATGTCCTAGACTACGCTCTCTTGATATTGGAAAATGTAGAAAATT
AACGGACGCTTCGTTGTACGGACTGTCTCGTTGTACATTGTTACGGAGAT
TGAACTTAAAAGGTTGTTGCAAAGTTACAGATGCTGGGTTGAGGAAATTA
GCCACTATTTGTAAGAATCTGCGACATCTTGATGTTAGAGACTGTTTATT
CTCACCAGAGACTTACGAATATGTTCGACTTCGTTGCCCGTTGTGTGATA
TACAACGCTCGTATATACATGAATGCTAAAATTGATATAATAATTACTGC
Atattatacacccccttctcacagacacggtaagattttttcagccagtg
gaggGTAAAAGTAAGGGAACATAACTCAATAGGGACTGTTAtttccatgt
tttttatggcttgggatttaaattccattgtttttgagcgggaaaattca
gtggggatggaaaaatagaacagatatttttgccaatttttccagtggga
aggattCCAagagggtctgtgagaagggtgtaATATTATATATTTCAAAG
ATTATAATATATATCGATATATATTctaccatgaacatataaacgactgg
acatccatctcctttgtctttttgtagaaagggctgctagcttcgttgcc
gcctcgttaaaagcataaaatg
Run BLAST on NCBI

protein sequence of TCONS_00066702-protein

>TCONS_00066702-protein ID=TCONS_00066702-protein|Name=TCONS_00066702-protein|organism=Clytia hemisphaerica|type=polypeptide|length=791bp
MLKFAKATDRRDRFSAASEKSTETESGQIVYRKISNNKNPESEKLSITAT
TTSYITDDSQTGELEKDFSIDDDSLKPGSDTDSAFSVEQIPTEELLYILG
PYRLYSTINEEESIDQLNNIDYNENVIISDIKLSRRQQHSRENSFEYFPP
KTTCYAVGGKNKPKKKTDLNFQLKFDKPNKQKTKSESSDLSPIDVSENYA
GTSNEVKKEPKKKSSGIKKTPSFKDRIISPLMKKRFNKRSASDSKLSKIS
KSIESEESIQRSATVGNTSNIARSPIDNNTESNFKRFDDSRKHINRQTVK
NRHPSSQSSTKSSNKSTESFDESLSKNLTINRLVDENNDTVFEDQSNLTH
SDCSFSESDINDMNGHRQQRQKYYRKKVNSPHPNTPLRTASPGSSVDSQY
GGSTSSLSTVSYQSISTTDVSCLPDKLLIRIFTYLDTSDVCRLSRVCRRW
SELYLSEKLWEHIKVTNMTSLDIDSTLNVMLQRLAYTTSCLNIRQMKLDG
CKELTDEGIQTMALRCPELRALEIASCDQVTARGVYNVLVNCPNLAFLNL
SGCEGVSSFSNCSDIISSPFSFGELKYLDLSSCSCFTDSDIEILLGRAPS
LEYLYLRLCDSISNIGIEAIARLCPNLKEISLNDCVNITDHGVLKLLDSC
HNLRYVSLAKCPITNMVLEQIASSPNNLLRHLNLYDCEYITDIAIMKLSA
SCPRLRSLDIGKCRKLTDASLYGLSRCTLLRRLNLKGCCKVTDAGLRKLA
TICKNLRHLDVRDCLFSPETYEYVRLRCPLCDIQRSYIHEC
Run BLAST on NCBI

transcript from alignment at scaffold_458:83476..87458-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066702 ID=TCONS_00066702|Name=TCONS_00066702|organism=Clytia hemisphaerica|type=transcript|length=3983bp|location=Sequence derived from alignment at scaffold_458:83476..87458- (Clytia hemisphaerica)
CTATACTCTGTTTTTAATGCTCTGTCATTTTGTTTTCTTTTAGCAGTCGA
TTAAATGAAACAGAGAAAGGAAGTACATAAAAAGCTGACCAAAACTGCAA
TTTGATACCCACTTGAAGTTTGAATCAATTGGTTTTTGAAGGCTACTCGA
TTTGTCATTCGAAAAAGGGCTGTCTTCATGAGTCTTCATGTTGTTGTTAT
TGAAAGCAATAAAAACGTAATTTGACCAAACTATTTTGTTCGTCGTTGAG
AAAATGTTGAAGTTTGCAAAAGCTACTGACAGGAGAGGTAACGTTTTTAG
AGATCACTTTCTGTTTGGATTTTCTTTTTAACTTGTTTTTTTTATATGAC
TACATATGATTTTGAAACGTGTAAGGAATTTATCTTTAGGACGTTGTAGC
AAATTATACCTCTCTCAAACAGGCGACTACCTTTGCTGACCGACGGGGGT
GTGCTGCTAAGGTTTGAAAAATCTACATGGGACTCGTTTTTTGAATATTT
TGCCAAAAATTGGGGAAAAAAAAACCTAAATAAGAAAGAAATTCCAAAAT
TATCTCAAAAATTTCAACTTTTTTCCCAATCCCCCAAAAAGGTACCCTAC
GAAGGATTAATTTTCTATTTAGGTATTGTTGTGACTCTACAGACTCCTGG
ACGTGAAAAAAGGTACCCTGACCAGCGGCACATCCTCGTACCCCTTTTTG
CCCAAGTGCCCACCACCCGATCCTTTAAACCATAGCAGACAGTGGAGATA
TTTTCAACGTTGTTTCTGCATGTCATAACTTTACATCCTTTATATTGGAC
TCTTCCAGAAAAAATCTGTTCATGGGTGAAAAAAAGTCCTAACTGTCCAA
GGGATAAATCTGCGATGTCCAGGGGTAAACTTTGGTGTCCAGGGGGTTAA
ATTGATGAGTGTCCATGGGGTGGAAAATGAAAATGTCCAGGGTAATTCAT
TGAAAAAATAATATATCCTCCACCCCCAATGAACGGATTTTTTCTGGAAG
AGCCCATTGCACGATTGCACAGATAATACAGTTTTAAAAATCATATACAG
CATGAACAAGCAAGTTCTGTCATTGCTACGTCTATTTACTTTATCTGTTC
CAAATTTTAAAGCATATAAGATAATTGTTGCTTAACTTTAGTAAACAGAA
TCCATATCTCTCAATATTCACAACAGCTAAGTTGCAATATATGTTTGTCC
AACGACAAGTTGAACTTTAGAATAAATTGCTTCATGTTTTTTTTATAGAT
CGCTTCTCAGCTGCTTCCGAAAAATCGACAGAAACCGAAAGTGGACAAAT
CGTATACCGTAAAATATCGAACAACAAAAACCCTGAATCTGAAAAATTAT
CGATAACAGCCACGACAACTTCTTATATCACCGACGACTCCCAGACTGGT
GAATTGGAGAAAGATTTTTCAATAGATGATGATTCTTTGAAGCCAGGATC
AGATACTGACTCAGCATTTTCTGTTGAGCAAATCCCTACCGAAGAGCTTT
TATACATTCTTGGTCCATATCGTCTGTACAGTACTATTAACGAGGAAGAG
AGCATCGATCAACTCAATAATATCGATTACAACGAGAATGTAATTATATC
GGATATCAAATTATCGAGACGCCAACAACATAGCCGAGAAAATAGTTTCG
AGTATTTTCCACCTAAAACCACATGTTACGCTGTGGGTGGTAAAAACAAA
CCAAAAAAGAAAACAGACTTAAATTTCCAACTGAAATTTGATAAACCTAA
CAAACAAAAAACAAAATCCGAAAGTTCCGATCTTAGCCCGATTGATGTTT
CCGAAAATTACGCTGGAACTTCGAATGAAGTGAAAAAAGAACCAAAGAAG
AAATCCAGTGGAATAAAGAAAACACCCTCGTTTAAGGACCGCATTATTTC
ACCTTTGATGAAAAAAAGATTCAATAAAAGATCAGCAAGCGATTCGAAAT
TATCGAAAATTTCCAAATCGATTGAGTCGGAGGAATCGATACAACGAAGT
GCAACTGTAGGGAACACAAGCAATATTGCTAGATCACCAATCGATAATAA
CACAGAATCGAATTTCAAACGATTTGACGATTCTCGAAAACATATCAATC
GACAAACTGTTAAAAATCGACATCCTAGTAGTCAATCATCGACAAAATCT
TCGAACAAATCAACCGAAAGTTTTGACGAAAGTTTATCAAAGAACCTGAC
AATAAATAGACTTGTGGATGAAAACAACGATACAGTTTTCGAAGATCAAT
CCAACTTAACGCATAGCGATTGCAGTTTTTCGGAAAGCGATATCAACGAT
ATGAACGGGCACCGACAACAACGTCAGAAATATTACCGTAAGAAGGTAAA
TTCACCGCATCCCAATACTCCTTTGCGGACGGCGTCTCCAGGCTCTTCAG
TCGATTCCCAGTACGGTGGAAGTACATCAAGTTTATCAACGGTCAGTTAT
CAATCAATTAGCACCACGGATGTGTCCTGCTTACCTGATAAATTGCTCAT
CCGTATCTTCACATATCTCGATACAAGTGACGTATGCCGTTTATCAAGAG
TTTGTCGCAGGTGGAGCGAATTATATTTATCAGAAAAACTATGGGAACAT
ATCAAAGTTACGAACATGACTAGTCTGGATATTGATTCGACATTGAATGT
AATGTTACAGAGGCTTGCGTATACGACTTCTTGCTTAAATATTCGTCAAA
TGAAACTAGATGGATGTAAGGAGCTCACAGATGAAGGAATTCAAACTATG
GCTTTAAGATGTCCCGAACTTCGCGCTCTTGAAATTGCATCATGTGATCA
AGTCACGGCCCGTGGGGTATATAATGTACTTGTAAACTGCCCTAACTTAG
CATTCCTAAACTTATCAGGCTGTGAAGGCGTTTCGAGTTTCTCAAACTGT
TCTGATATCATAAGTTCACCGTTCAGTTTTGGCGAGTTGAAATATTTGGA
TTTGAGCTCATGCTCTTGTTTCACTGATAGCGATATTGAAATTTTACTCG
GACGAGCTCCTTCACTCGAATATCTTTATTTACGACTCTGCGATTCCATT
TCTAACATTGGTATTGAAGCAATAGCTAGACTGTGTCCTAATTTAAAGGA
GATTAGTCTTAACGATTGTGTTAATATCACTGACCATGGCGTGTTGAAGT
TACTAGATTCCTGTCATAATTTACGATATGTCAGTCTCGCAAAATGTCCC
ATTACAAATATGGTTTTGGAACAAATTGCATCATCGCCAAATAATTTATT
GAGACATTTAAACCTTTACGATTGTGAATATATTACTGATATTGCTATCA
TGAAATTGTCTGCATCATGTCCTAGACTACGCTCTCTTGATATTGGAAAA
TGTAGAAAATTAACGGACGCTTCGTTGTACGGACTGTCTCGTTGTACATT
GTTACGGAGATTGAACTTAAAAGGTTGTTGCAAAGTTACAGATGCTGGGT
TGAGGAAATTAGCCACTATTTGTAAGAATCTGCGACATCTTGATGTTAGA
GACTGTTTATTCTCACCAGAGACTTACGAATATGTTCGACTTCGTTGCCC
GTTGTGTGATATACAACGCTCGTATATACATGAATGCTAAAATTGATATA
ATAATTACTGCATATTATACACCCCCTTCTCACAGACACGGTAAGATTTT
TTCAGCCAGTGGAGGGTAAAAGTAAGGGAACATAACTCAATAGGGACTGT
TATTTCCATGTTTTTTATGGCTTGGGATTTAAATTCCATTGTTTTTGAGC
GGGAAAATTCAGTGGGGATGGAAAAATAGAACAGATATTTTTGCCAATTT
TTCCAGTGGGAAGGATTCCAAGAGGGTCTGTGAGAAGGGTGTAATATTAT
ATATTTCAAAGATTATAATATATATCGATATATATTCTACCATGAACATA
TAAACGACTGGACATCCATCTCCTTTGTCTTTTTGTAGAAAGGGCTGCTA
GCTTCGTTGCCGCCTCGTTAAAAGCATAAAATG

Coding sequence (CDS) from alignment at scaffold_458:83476..87458-

>TCONS_00066702 ID=TCONS_00066702|Name=TCONS_00066702|organism=Clytia hemisphaerica|type=CDS|length=4752bp|location=Sequence derived from alignment at scaffold_458:83476..87458- (Clytia hemisphaerica)
ATCGCTTCTCAGCTGCTTCCGAAAAATCGACAGAAACCGAAAGTGGACAA
ATCGTATACCGTAAAATATCGAACAACAAAAACCCTGAATCTGAAAAATT
ATCGATAACAGCCACGACAACTTCTTATATCACCGACGACTCCCAGACTG
GTGAATTGGAGAAAGATTTTTCAATAGATGATGATTCTTTGAAGCCAGGA
TCAGATACTGACTCAGCATTTTCTGTTGAGCAAATCCCTACCGAAGAGCT
TTTATACATTCTTGGTCCATATCGTCTGTACAGTACTATTAACGAGGAAG
AGAGCATCGATCAACTCAATAATATCGATTACAACGAGAATGTAATTATA
TCGGATATCAAATTATCGAGACGCCAACAACATAGCCGAGAAAATAGTTT
CGAGTATTTTCCACCTAAAACCACATGTTACGCTGTGGGTGGTAAAAACA
AACCAAAAAAGAAAACAGACTTAAATTTCCAACTGAAATTTGATAAACCT
AACAAACAAAAAACAAAATCCGAAAGTTCCGATCTTAGCCCGATTGATGT
TTCCGAAAATTACGCTGGAACTTCGAATGAAGTGAAAAAAGAACCAAAGA
AGAAATCCAGTGGAATAAAGAAAACACCCTCGTTTAAGGACCGCATTATT
TCACCTTTGATGAAAAAAAGATTCAATAAAAGATCAGCAAGCGATTCGAA
ATTATCGAAAATTTCCAAATCGATTGAGTCGGAGGAATCGATACAACGAA
GTGCAACTGTAGGGAACACAAGCAATATTGCTAGATCACCAATCGATAAT
AACACAGAATCGAATTTCAAACGATTTGACGATTCTCGAAAACATATCAA
TCGACAAACTGTTAAAAATCGACATCCTAGTAGTCAATCATCGACAAAAT
CTTCGAACAAATCAACCGAAAGTTTTGACGAAAGTTTATCAAAGAACCTG
ACAATAAATAGACTTGTGGATGAAAACAACGATACAGTTTTCGAAGATCA
ATCCAACTTAACGCATAGCGATTGCAGTTTTTCGGAAAGCGATATCAACG
ATATGAACGGGCACCGACAACAACGTCAGAAATATTACCGTAAGAAGGTA
AATTCACCGCATCCCAATACTCCTTTGCGGACGGCGTCTCCAGGCTCTTC
AGTCGATTCCCAGTACGGTGGAAGTACATCAAGTTTATCAACGGTCAGTT
ATCAATCAATTAGCACCACGGATGTGTCCTGCTTACCTGATAAATTGCTC
ATCCGTATCTTCACATATCTCGATACAAGTGACGTATGCCGTTTATCAAG
AGTTTGTCGCAGGTGGAGCGAATTATATTTATCAGAAAAACTATGGGAAC
ATATCAAAGTTACGAACATGACTAGTCTGGATATTGATTCGACATTGAAT
GTAATGTTACAGAGGCTTGCGTATACGACTTCTTGCTTAAATATTCGTCA
AATGAAACTAGATGGATGTAAGGAGCTCACAGATGAAGGAATTCAAACTA
TGGCTTTAAGATGTCCCGAACTTCGCGCTCTTGAAATTGCATCATGTGAT
CAAGTCACGGCCCGTGGGGTATATAATGTACTTGTAAACTGCCCTAACTT
AGCATTCCTAAACTTATCAGGCTGTGAAGGCGTTTCGAGTTTCTCAAACT
GTTCTGATATCATAAGTTCACCGTTCAGTTTTGGCGAGTTGAAATATTTG
GATTTGAGCTCATGCTCTTGTTTCACTGATAGCGATATTGAAATTTTACT
CGGACGAGCTCCTTCACTCGAATATCTTTATTTACGACTCTGCGATTCCA
TTTCTAACATTGGTATTGAAGCAATAGCTAGACTGTGTCCTAATTTAAAG
GAGATTAGTCTTAACGATTGTGTTAATATCACTGACCATGGCGTGTTGAA
GTTACTAGATTCCTGTCATAATTTACGATATGTCAGTCTCGCAAAATGTC
CCATTACAAATATGGTTTTGGAACAAATTGCATCATCGCCAAATAATTTA
TTGAGACATTTAAACCTTTACGATTGTGAATATATTACTGATATTGCTAT
CATGAAATTGTCTGCATCATGTCCTAGACTACGCTCTCTTGATATTGGAA
AATGTAGAAAATTAACGGACGCTTCGTTGTACGGACTGTCTCGTTGTACA
TTGTTACGGAGATTGAACTTAAAAGGTTGTTGCAAAGTTACAGATGCTGG
GTTGAGGAAATTAGCCACTATTTGTAAGAATCTGCGACATCTTGATGTTA
GAGACTGTTTATTCTCACCAGAGACTTACGAATATGTTCGACTTCGTTGC
CCGTTGTGTGATATACAACGCTCGTATATACATGAATGCTAAATGTTGAA
GTTTGCAAAAGCTACTGACAGGAGAGATCGCTTCTCAGCTGCTTCCGAAA
AATCGACAGAAACCGAAAGTGGACAAATCGTATACCGTAAAATATCGAAC
AACAAAAACCCTGAATCTGAAAAATTATCGATAACAGCCACGACAACTTC
TTATATCACCGACGACTCCCAGACTGGTGAATTGGAGAAAGATTTTTCAA
TAGATGATGATTCTTTGAAGCCAGGATCAGATACTGACTCAGCATTTTCT
GTTGAGCAAATCCCTACCGAAGAGCTTTTATACATTCTTGGTCCATATCG
TCTGTACAGTACTATTAACGAGGAAGAGAGCATCGATCAACTCAATAATA
TCGATTACAACGAGAATGTAATTATATCGGATATCAAATTATCGAGACGC
CAACAACATAGCCGAGAAAATAGTTTCGAGTATTTTCCACCTAAAACCAC
ATGTTACGCTGTGGGTGGTAAAAACAAACCAAAAAAGAAAACAGACTTAA
ATTTCCAACTGAAATTTGATAAACCTAACAAACAAAAAACAAAATCCGAA
AGTTCCGATCTTAGCCCGATTGATGTTTCCGAAAATTACGCTGGAACTTC
GAATGAAGTGAAAAAAGAACCAAAGAAGAAATCCAGTGGAATAAAGAAAA
CACCCTCGTTTAAGGACCGCATTATTTCACCTTTGATGAAAAAAAGATTC
AATAAAAGATCAGCAAGCGATTCGAAATTATCGAAAATTTCCAAATCGAT
TGAGTCGGAGGAATCGATACAACGAAGTGCAACTGTAGGGAACACAAGCA
ATATTGCTAGATCACCAATCGATAATAACACAGAATCGAATTTCAAACGA
TTTGACGATTCTCGAAAACATATCAATCGACAAACTGTTAAAAATCGACA
TCCTAGTAGTCAATCATCGACAAAATCTTCGAACAAATCAACCGAAAGTT
TTGACGAAAGTTTATCAAAGAACCTGACAATAAATAGACTTGTGGATGAA
AACAACGATACAGTTTTCGAAGATCAATCCAACTTAACGCATAGCGATTG
CAGTTTTTCGGAAAGCGATATCAACGATATGAACGGGCACCGACAACAAC
GTCAGAAATATTACCGTAAGAAGGTAAATTCACCGCATCCCAATACTCCT
TTGCGGACGGCGTCTCCAGGCTCTTCAGTCGATTCCCAGTACGGTGGAAG
TACATCAAGTTTATCAACGGTCAGTTATCAATCAATTAGCACCACGGATG
TGTCCTGCTTACCTGATAAATTGCTCATCCGTATCTTCACATATCTCGAT
ACAAGTGACGTATGCCGTTTATCAAGAGTTTGTCGCAGGTGGAGCGAATT
ATATTTATCAGAAAAACTATGGGAACATATCAAAGTTACGAACATGACTA
GTCTGGATATTGATTCGACATTGAATGTAATGTTACAGAGGCTTGCGTAT
ACGACTTCTTGCTTAAATATTCGTCAAATGAAACTAGATGGATGTAAGGA
GCTCACAGATGAAGGAATTCAAACTATGGCTTTAAGATGTCCCGAACTTC
GCGCTCTTGAAATTGCATCATGTGATCAAGTCACGGCCCGTGGGGTATAT
AATGTACTTGTAAACTGCCCTAACTTAGCATTCCTAAACTTATCAGGCTG
TGAAGGCGTTTCGAGTTTCTCAAACTGTTCTGATATCATAAGTTCACCGT
TCAGTTTTGGCGAGTTGAAATATTTGGATTTGAGCTCATGCTCTTGTTTC
ACTGATAGCGATATTGAAATTTTACTCGGACGAGCTCCTTCACTCGAATA
TCTTTATTTACGACTCTGCGATTCCATTTCTAACATTGGTATTGAAGCAA
TAGCTAGACTGTGTCCTAATTTAAAGGAGATTAGTCTTAACGATTGTGTT
AATATCACTGACCATGGCGTGTTGAAGTTACTAGATTCCTGTCATAATTT
ACGATATGTCAGTCTCGCAAAATGTCCCATTACAAATATGGTTTTGGAAC
AAATTGCATCATCGCCAAATAATTTATTGAGACATTTAAACCTTTACGAT
TGTGAATATATTACTGATATTGCTATCATGAAATTGTCTGCATCATGTCC
TAGACTACGCTCTCTTGATATTGGAAAATGTAGAAAATTAACGGACGCTT
CGTTGTACGGACTGTCTCGTTGTACATTGTTACGGAGATTGAACTTAAAA
GGTTGTTGCAAAGTTACAGATGCTGGGTTGAGGAAATTAGCCACTATTTG
TAAGAATCTGCGACATCTTGATGTTAGAGACTGTTTATTCTCACCAGAGA
CTTACGAATATGTTCGACTTCGTTGCCCGTTGTGTGATATACAACGCTCG
TATATACATGAATGCTAAATGTTGAAGTTTGCAAAAGCTACTGACAGGAG
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041708XLOC_041708Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066702-proteinTCONS_00066702-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066702-exon-scaffold_458-1575043694:87172..87458TCONS_00066702-exon-scaffold_458-1575043694:87172..87458Clytia hemisphaericaexon
TCONS_00066702-exon-scaffold_458-1575043694:83476..86210TCONS_00066702-exon-scaffold_458-1575043694:83476..86210Clytia hemisphaericaexon
TCONS_00066702-exon-scaffold_458-1510915933:87172..87458TCONS_00066702-exon-scaffold_458-1510915933:87172..87458Clytia hemisphaericaexon
TCONS_00066702-exon-scaffold_458-1510915933:83476..86210TCONS_00066702-exon-scaffold_458-1510915933:83476..86210Clytia hemisphaericaexon
TCONS_00066702-exon-scaffold_458-1491911889:87172..87458TCONS_00066702-exon-scaffold_458-1491911889:87172..87458Clytia hemisphaericaexon
TCONS_00066702-exon-scaffold_458-1491911889:83476..86210TCONS_00066702-exon-scaffold_458-1491911889:83476..86210Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_458supercontigscaffold_458:83476..87458 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.463813	0.576735	0.206039	0.0730738	1.01507	0.68061	2.0908	1.91395	0.802104	1.91946	1.51539	1.41926	9.94203	8.27455	7.15531	10.296	4.92246	5.88573	5.16128	4.01323	6.58954	6.5564	3.59388	4.89446	7.03769	7.88065	0.536321	0.848052	3.58296	2.42618
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001810F-box_dom
IPR006553Leu-rich_rpt_Cys-con_subtyp
IPR032675L_dom-like
IPR001611Leu-rich_rpt
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00066702 vs. Swiss-Prot (Human)
Match: FBXL7 (F-box/LRR-repeat protein 7 OS=Homo sapiens GN=FBXL7 PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 6.947e-64
Identity = 133/372 (35.75%), Postives = 220/372 (59.14%), Query Frame = 2 
Query: 1520 LPDKLLIRIFTYLDTSDVCRLSRVCRRWSELYLSEKLWEHIKVTNMTSLDIDSTLNVMLQRLAYTTS--CLNIRQMKLDGCKELTDEGIQTMALRCPELRALEIASCDQVTARGVYNVLVNCPNLAFLNLSGCEGVX--XXXXXXXXXXXPFSFGE--LKYLDLSSCSCFTDSDIEILLGRAPSLEYLYLRLCDSISNIGIEAIARLCPNLKEISLNDCVNITDHGVLKLLDSCHNLRYVSLAKCP-ITNMVLEQIASSPNNLLRHLNLYDCEYITDIAIMKLSASCPRLRSLDIGKCRKLTDASLYGLS-RCTLLRRLNLKGCCKVTDAGLRKLATICKNLRHLDVRDCLFSPETYEYVRLRCPLCDIQRS 2611
            LPD  +++IF++L T+ +CR +RVCRRW  L    +LW  I++T  T +++D  L V+ +RL   T   CL +  + + GC+ LTD G+ T+A  CPELR LE++ C  ++   V++V+  CPNL  L++SGC  V+  S +  + I  SP    +  ++YLD++ C    D  +  +      L +LYLR C  +++ G+  +   C ++KE+S++DC  ++D G+ ++      LRY+S+A C  +T++ +  +A   +  LR+LN   CE ITD  +  L+ +C +L+SLDIGKC  ++D  L  L+  C  L+RL+LK C  +T  GL+ +A  C +L+ L+V+DC  S E   +V+  C  C I+ +
Sbjct:  117 LPDHSMVQIFSFLPTNQLCRCARVCRRWYNLAWDPRLWRTIRLTGET-INVDRALKVLTRRLCQDTPNVCLMLETVTVSGCRRLTDRGLYTIAQCCPELRRLEVSGCYNISNEAVFDVVSLCPNLEHLDVSGCSKVTCISLTREASIKLSPLHGKQISIRYLDMTDCFVLEDEGLHTIAAHCTQLTHLYLRRCVRLTDEGLRYLVIYCASIKELSVSDCRFVSDFGLREIAKLESRLRYLSIAHCGRVTDVGIRYVAKYCSK-LRYLNARGCEGITDHGVEYLAKNCTKLKSLDIGKCPLVSDTGLECLALNCFNLKRLSLKSCESITGQGLQIVAANCFDLQTLNVQDCEVSVEALRFVKRHCKRCVIEHT 486
The following BLAST results are available for this feature:
BLAST of TCONS_00066702 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FBXL76.947e-6435.75F-box/LRR-repeat protein 7 OS=Homo sapiens GN=FBXL... [more]
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