TCONS_00066753-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00066753-protein
Unique NameTCONS_00066753-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length190

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00066753-protein ID=TCONS_00066753-protein|Name=TCONS_00066753-protein|organism=Clytia hemisphaerica|type=polypeptide|length=190bp
MGNDDKVEEIKVEKWDGNALKHALDDAVRKIFTDDLKYIEKNTYVDVRLL
LSFLGVAVAGYALIYDFLNPFPASKWVLAFCVISYFIFMTILTGFMTFVE
KNIILLATQKEASGLDPDSTWTIQTSLKRFDDEFLIEMIKDDGATKKTIT
GSLTSSVANYVDVNGVILVNKLKTDVLAQHKAMGNEKKNQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_041747XLOC_041747Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00066753TCONS_00066753Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009582SigPept_cplx_su2
Vocabulary: Biological Process
TermDefinition
GO:0006465signal peptide processing
Vocabulary: Molecular Function
TermDefinition
GO:0008233peptidase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0005787signal peptidase complex
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006465 signal peptide processing
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005787 signal peptidase complex
molecular_function GO:0008233 peptidase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009582Signal peptidase complex subunit 2PFAMPF06703SPC25coord: 19..179
e-value: 1.8E-39
score: 135.0

Blast
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BLAST of TCONS_00066753-protein vs. Swiss-Prot (Human)
Match: SPCS2 (Signal peptidase complex subunit 2 OS=Homo sapiens GN=SPCS2 PE=1 SV=3)

HSP 1 Score: 154.836 bits (390), Expect = 1.236e-47
Identity = 72/185 (38.92%), Postives = 122/185 (65.95%), Query Frame = 0 
Query:    4 DDKVEEIKVEKWDGNALKHALDDAVRKIFTDDLKYIEKNTYVDVRLLLSFLGVAVAGYALIYDFLNPFPASKWVLAFCVISYFIFMTILTGFMTFVEKNIILLATQKEASGLDPDSTWTIQTSLKRFDDEFLIEMIKDDGATKKTITGSLTSSVANYVDVNGVILVNKLKTDVLAQHKAMGNEKK 188
            DDK   +K++KWDG+A+K++LDD+ +K+  +  KY+E    +D RL +  +    A  ALI+D+++PFP SK VLA CVISYF+ M ILT + ++ EK+I L+A +K+ +G+DPD  W + +SLKRFDD++ +++    G TK+      T S+A + D +G ++++  + ++   H ++  E+K
Sbjct:   42 DDK--PVKIDKWDGSAVKNSLDDSAKKVLLEKYKYVENFGLIDGRLTICTISCFFAIVALIWDYMHPFPESKPVLALCVISYFVMMGILTIYTSYKEKSIFLVAHRKDPTGMDPDDIWQLSSSLKRFDDKYTLKLTFISGRTKQQREAEFTKSIAKFFDHSGTLVMDAYEPEISRLHDSLAIERK 224
The following BLAST results are available for this feature:
BLAST of TCONS_00066753-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SPCS21.236e-4738.92Signal peptidase complex subunit 2 OS=Homo sapiens... [more]
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