TCONS_00066755-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00066755-protein
Unique NameTCONS_00066755-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1453

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00066755-protein ID=TCONS_00066755-protein|Name=TCONS_00066755-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1453bp
MFGQTQLPAFGEPKPTQLGSQLPSETSQPLIPAAATKSTSFSFGAQSNTT
PLKHPPLQSTNPPKPMFSSNPAPDVIQPKPTAAFPSTTPVKPMFGGTQTE
SPVPSMNKNLFASPQQLVVSISSKPFPTQPQPIAATAFVQTPQIPKQAPA
PVKPSFAPVPDNRIPSPVIPPNKMAPPPAYQATPLLHQPVAGGIHQKREQ
DILSQTEKLDTALQNHINEEINSFNEELEAFTKAFSSVTERKDLIGSQEE
MESLTNGINSFSAHIDEYKTNMEENKTESKELRNGVLSNFQNIDEALLRK
EKTEDRRYTNVLKSRQLDPVSARQRKELRAQTNHLENLLGEINVALDTEW
KENQIRMNKNRQKRAPGAHQNQQIYKTIEAIEKITNNLSNRIKGISLESE
ESHLITMNTTRLNSQMSEKNSTSSTTVTSSKDSTMKMNQLREMLSRRGNT
PVRKSKQYSYPDISLASSSSSVLPTPHNKLNPKATSTPAVDQSFFSPKSD
GAFTNKMQTLSEEGNYAKAAAQKLREQQSSSAFTPKVTPLLPKAPENTPV
TPVVPQVLRHQPPELATPDRAPSITKNLFGQTSTMSAQKDKEPVFSSSSS
FKGFVPQNQSQQPVESSSKPLSFVGIAPKPTTDSPAKSLTSFGGFGQQQT
STGFGNTKPAGGFSFGTPASSAAPSQPKNESSFKGFGVSSNTTTTASSSK
PAFSLTPSLSKEDSQPSAVTTSASLPSMSATFASKSSVAATSSSSFGFGA
GSSASTSFAAPNSNATTPSLFGAPPSSNIPSVASDQKPAATVVSSPSVSS
LFGSKPPATAQVKPSPGGLFGSVATSISGESKAEEITSTPGGLFAPTGGL
FGTPKTGGLFGSSPATVSSAPPVSSAPPTSSTSPVIAKPSTAADPTSTFQ
LGTNSTSTTGGAFSFGKSTTIPATSTSGGLFGTPKSEATSSSTTTGFSFG
ASTSSTSTAGFTLKSSETSTTVATSTSSTGGLFGSTTSTSTSGGLFGTPT
TKATTLESSAKPSEGLFGSSATTNTATGGLFGSTSTSSSGGLFGSSTITT
TTSSGSFFGGLSAKESPFGTASATTSSSNGGGLFGNSTATTTSSSAGGMF
GSSTTKSSSGLFGSTATPSSSSGGLFGSSATTSSSSGGLFGSTTSSSSSS
GGLFGSSTTATSTTSGGLFGSSPASSGGLFGNAAKATASTGLFGSTSTTT
STSGGGLFGSTTASNSPFGGASASGGFGSTNKSNQESSGASSSGGFGGGF
GLGGKPINDPNKNPFGSTPAANVANTSSNLWFGGSTTSTFGTQSGQSGQS
GGGSFSKGFGAGLSSPQNSNSTFGGGNSGSGSFGSTQAAFGGTPAFGSAP
TFGSPSGGGFGAAPVFGSGPTFGGSPPKPTFGANAPTFGSTANMGGGSTF
GSNSAVFGGSGGASFGSLANQSGNAPTFGGQQSGATSFGSINQQASGNSS
TSP
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_041748XLOC_041748Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00066755TCONS_00066755Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR025574Nucleoporin_FG_rpt
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 265..285
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..69
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 583..723
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1413..1453
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 412..433
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 862..905
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 796..818
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 831..850
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1107..1128
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1222..1271
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1285..1336
IPR025574Nucleoporin FG repeatPFAMPF13634Nucleoporin_FGcoord: 1098..1181
e-value: 9.2E-12
score: 45.5
coord: 849..950
e-value: 7.3
score: 7.4
coord: 974..1059
e-value: 0.12
score: 13.2

Blast
[Close]
BLAST of TCONS_00066755-protein vs. Swiss-Prot (Human)
Match: NU214 (Nuclear pore complex protein Nup214 OS=Homo sapiens GN=NUP214 PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 8.761e-24
Identity = 83/342 (24.27%), Postives = 137/342 (40.06%), Query Frame = 0 
Query:  150 APVKPSFAPVPDNR--------IPSPVIPPNKMAPPPAYQATPLLH--QPVAGGI--HQKREQDILSQTEKLDTALQNHINEEINSFNEELEAFTKAFSSVTERKDLIGSQEEMESLTNGINSFSAHIDEYKTNMEENKTESKELRNGVLSNFQNIDEALLRKEKTEDRRYTNVLKSRQLDPVSARQRKELRAQTNHLENLLGEINVALDTEWKENQIRMNKNRQKRAPGAHQNQQIYKTIEAIEKITNNLSNRIKGI--------------------------SLESEESHLITMNTTRLNSQMSEKNSTSSTTVTSSKDSTMKMNQLREMLSRRGNTPVR 453
             P+K S  P P  R        +PS V    ++ PP A   +P     QP       HQ ++ D           +   I EEI  F +ELE      S    +   +G+ EEM+ L    +     + E K   E    +   L+  +L  F  ++EA  + E+  D  Y ++L  R LDP S  Q +E+R    +++  + ++N  LD EW ++  +  K R    P   + + ++ T+    +I N    R+  +                          S+ S +S L ++    L + +  ++ T S     +K S MK  QLR  L++R   PVR
Sbjct:  637 VPLKSSVLPSPSGRSAQGSSSPVPSMVQKSPRITPPAAKPGSPQAKSLQPAVAEKQGHQWKDSD----------PVMAGIGEEIAHFQKELEELKARTSKACFQ---VGTSEEMKMLRTESDDLHTFLLEIKETTESLHGDISSLKTTLLEGFAGVEEAREQNERNRDSGYLHLLYKRPLDPKSEAQLQEIRRLHQYVKFAVQDVNDVLDLEWDQHLEQKKKQRHLLVP---ERETLFNTLANNREIINQQRKRLNHLVDSLQQLRLYKQTSLWSLSSAVPSQSSIHSFDSDLESLCNALLKTTI--ESHTKSLPKVPAKLSPMKQAQLRNFLAKRKTPPVR 960
The following BLAST results are available for this feature:
BLAST of TCONS_00066755-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NU2148.761e-2424.27Nuclear pore complex protein Nup214 OS=Homo sapien... [more]
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