TCONS_00066788-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00066788-protein
Unique NameTCONS_00066788-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length203

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00066788-protein ID=TCONS_00066788-protein|Name=TCONS_00066788-protein|organism=Clytia hemisphaerica|type=polypeptide|length=203bp
MNTTQPSAKKYKLVFLGDQSVGKTSLITRFMYDSFDSTYQATIGIDFLSK
KLSVDGKEVALQIWDTAGTERFRSLIPNYIRDLSAAVAAYDITSMSSFDS
VRSWINDIRQEKENVLIVLCGNKSDLAEKRRVSYEQGMRLAEELGTMYME
TSAKTGTNVKKLFRTIAVALHEGVENSMPQEPKNHIVIGSPSPEHNTGEG
CYC
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_041763XLOC_041763Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00066788TCONS_00066788Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR001806Small_GTPase
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 11..32
score: 44.6
coord: 34..50
score: 33.87
coord: 52..74
score: 50.69
coord: 113..126
score: 53.31
coord: 148..170
score: 40.42
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 8..173
e-value: 9.3E-37
score: 138.1
NoneNo IPR availableSMARTSM00174rho_sub_3coord: 13..172
e-value: 9.8E-13
score: 43.1
NoneNo IPR availableSMARTSM00176ran_sub_2coord: 16..200
e-value: 3.9E-5
score: 23.9
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 11..173
e-value: 8.2E-77
score: 271.2
NoneNo IPR availableGENE3D3.40.50.300coord: 75..170
e-value: 1.6E-35
score: 120.7
NoneNo IPR availableGENE3D3.30.70.1390coord: 9..74
e-value: 6.2E-28
score: 96.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 179..203
NoneNo IPR availablePROSITEPS51419RABcoord: 5..203
score: 30.648
NoneNo IPR availableCDDcd01861Rab6coord: 11..170
e-value: 5.21893E-92
score: 267.951
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 9..166
e-value: 8.6E-30
score: 101.6
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 12..169
e-value: 1.5E-57
score: 193.7
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 7..181

Blast
[Close]
BLAST of TCONS_00066788-protein vs. Swiss-Prot (Human)
Match: RAB6A (Ras-related protein Rab-6A OS=Homo sapiens GN=RAB6A PE=1 SV=3)

HSP 1 Score: 229.95 bits (585), Expect = 4.053e-77
Identity = 114/198 (57.58%), Postives = 151/198 (76.26%), Query Frame = 0 
Query:    9 KKYKLVFLGDQSVGKTSLITRFMYDSFDSTYQATIGIDFLSKKLSVDGKEVALQIWDTAGTERFRSLIPNYIRDLSAAVAAYDITSMSSFDSVRSWINDIRQEK-ENVLIVLCGNKSDLAEKRRVSYEQGMRLAEELGTMYMETSAKTGTNVKKLFRTIAVALHEGVENSMPQEPKNHIVIGSPSPEHN--TGEGCYC 203
            +K+KLVFLG+QSVGKTSLITRFMYDSFD+TYQATIGIDFLSK + ++ + V LQ+WDTAG ERFRSLIP+YIRD + AV  YDIT+++SF     WI+D+R E+  +V+I+L GNK+DLA+KR+VS E+G R A+EL  M++ETSAK G NVK+LFR +A AL  G+E++  +  ++ I I    P+    +  GC C
Sbjct:   12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP-GMESTQDRSREDMIDIKLEKPQEQPVSEGGCSC 208
The following BLAST results are available for this feature:
BLAST of TCONS_00066788-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAB6A4.053e-7757.58Ras-related protein Rab-6A OS=Homo sapiens GN=RAB6... [more]
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