TCONS_00066988-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00066988-protein
Unique NameTCONS_00066988-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length606

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00066988-protein ID=TCONS_00066988-protein|Name=TCONS_00066988-protein|organism=Clytia hemisphaerica|type=polypeptide|length=606bp
MADRKAELDRKKKRLEEIRAQRNKNKPSAAASTSTSSPVHSSPKHGADAT
SGSDIDNLLKGLDLGTTPSASTPKSAPDTQPAGSEVKTTTTSAPTKSVTL
SVSHREPVNVAPKELVSYEKGVQVQTIEEKDEPEPEPEIKTEEGNKDETD
DKPIKKEETPQVVEMSDEAKQKILQSQNFAQFFDHAARIIEKAICEEDYA
FDYGAIKDENEGDTMTSKKLALNRKFFDERWSKHRCVTCMDYSIQYPELL
VASYNQNEAAPQDPDGVALVWNNKYNTQTPEYIFHNQSAIMSVCFAQFHP
NLLVGGSYSGQIVLWDNRSRKRTPVQKTPLSASAHTHPVYCVEVVGTQNA
HNLITFSTDGKMCSWSLDMLSQPQDVIDLQHTHSRYVAVTGASFQPGDVN
NFVVGTEDGSVFSAQRHGTNQGLSEQFEGHHGPVTGINYNKVPGPIDFSH
LFLTSSFDWTIKLWNNKSTKVLYSFEDNGDYVYDVEWSPKHPALFATVDG
MGKLDLWNLNNDTEVPTSSVTVDPMAAINRVKWSGSGLQLAAGDDEGYIY
IYDVGEQLALPRPDEWNRLVNTLQELQANQATVGDLERPLSPSSSLQSSL
VSPGRI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_041852XLOC_041852Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00066988TCONS_00066988Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 1..25
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..106
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 584..606
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 121..162
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 277..316
e-value: 6.1E-4
score: 29.1
coord: 420..465
e-value: 0.0029
score: 26.9
coord: 372..415
e-value: 130.0
score: 3.7
coord: 323..366
e-value: 8.6
score: 11.1
coord: 513..553
e-value: 0.57
score: 18.5
coord: 468..508
e-value: 0.15
score: 21.1
IPR001680WD40 repeatPFAMPF00400WD40coord: 427..465
e-value: 0.02
score: 15.6
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 427..474
score: 9.773
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 3..430
e-value: 4.7E-22
score: 77.8
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 431..603
e-value: 1.3E-23
score: 83.3
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 265..562
score: 19.116
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 235..552

Blast
[Close]
BLAST of TCONS_00066988-protein vs. Swiss-Prot (Human)
Match: DC1I2 (Cytoplasmic dynein 1 intermediate chain 2 OS=Homo sapiens GN=DYNC1I2 PE=1 SV=3)

HSP 1 Score: 622.854 bits (1605), Expect = 0.000e+0
Identity = 297/493 (60.24%), Postives = 376/493 (76.27%), Query Frame = 0 
Query:   98 VTLSVSHREPVNVAPKELVSYEKGVQVQTIEE-KDEPEPEPEIKTEEGNKDETDDKPIKKEET------PQVVEMSDEAKQKILQSQNFAQFFDHAARIIEKAICEE-DYAFDY-GAIKDENEGDTMTSKKLALNRKFFDERWSKHRCVTCMDYSIQYPELLVASYNQNEAAPQDPDGVALVWNNKYNTQTPEYIFHNQSAIMSVCFAQFHPNLLVGGSYSGQIVLWDNRSRKRTPVQKTPLSASAHTHPVYCVEVVGTQNAHNLITFSTDGKMCSWSLDMLSQPQDVIDLQHTHSRYVAVTGASFQPGDVNNFVVGTEDGSVFSAQRHGTNQGLSEQFEGHHGPVTGINYNKVPGPIDFSHLFLTSSFDWTIKLWNNKSTKVLYSFEDNGDYVYDVEWSPKHPALFATVDGMGKLDLWNLNNDTEVPTSSVTVDPMAAINRVKWSGSGLQLAAGDDEGYIYIYDVGEQLALPRPDEWNRLVNTLQELQANQA 581
            + L ++    V+  P+E+V+Y K  Q   + + K++ E + ++   +   +  ++K +KK+E       P   E+++E KQ+IL S+ F  FFDH+ RI+E+A+ E+ +  FDY G   ++ EG+     KL+LNR+FFDERWSKHR V+C+D+S QYPELLVASYN NE AP +PDGVALVWN KY   TPEY+FH QSA+MS  FA+FHPNL+VGG+YSGQIVLWDNRS KRTPVQ+TPLSA+AHTHPVYCV VVGTQNAHNLI+ STDGK+CSWSLDMLS PQD ++L H  S+ VAVT  SF  GDVNNFVVG+E+GSV++A RHG+  G+SE FEGH GP+TGI+ +   G +DFSHLF+TSSFDWT+KLW  K+ K LYSFEDN DYVYDV WSP HPALFA VDGMG+LDLWNLNNDTEVPT+S++V+   A+NRV+W+ SG ++A GD EG I IYDVGEQ+A+PR DEW R   TL E+ AN+A
Sbjct:  136 IKLGMAKITQVDFPPREIVTYTKETQTPVMAQPKEDEEEDDDVVAPKPPIEPEEEKTLKKDEENDSKAPPH--ELTEEEKQQILHSEEFLSFFDHSTRIVERALSEQINIFFDYSGRDLEDKEGEIQAGAKLSLNRQFFDERWSKHRVVSCLDWSSQYPELLVASYNNNEDAPHEPDGVALVWNMKYKKTTPEYVFHCQSAVMSATFAKFHPNLVVGGTYSGQIVLWDNRSNKRTPVQRTPLSAAAHTHPVYCVNVVGTQNAHNLISISTDGKICSWSLDMLSHPQDSMELVHKQSKAVAVTSMSFPVGDVNNFVVGSEEGSVYTACRHGSKAGISEMFEGHQGPITGIHCHAAVGAVDFSHLFVTSSFDWTVKLWTTKNNKPLYSFEDNADYVYDVMWSPTHPALFACVDGMGRLDLWNLNNDTEVPTASISVEGNPALNRVRWTHSGREIAVGDSEGQIVIYDVGEQIAVPRNDEWARFGRTLAEINANRA 626
The following BLAST results are available for this feature:
BLAST of TCONS_00066988-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DC1I20.000e+060.24Cytoplasmic dynein 1 intermediate chain 2 OS=Homo ... [more]
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