TCONS_00066994-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00066994-protein
Unique NameTCONS_00066994-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length276

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00066994-protein ID=TCONS_00066994-protein|Name=TCONS_00066994-protein|organism=Clytia hemisphaerica|type=polypeptide|length=276bp
MSKSVKKVMEESRNRGLEEIDLVDKGITNIADVPYLLNMRNITTLTLSHN
RITKLPDAVANLASLENLNLFNNDLETLPLTICNLPKLRFLNCGINKLQE
LPKGFGACPTLEVLDLTYNNLTDRSFPGNFFYLAPLRALYLGDNEFEVLP
PEIKNLVNLQVLVVRDNDLISIPKEIGELTKLRELHIQNNRLQVLPPELG
YLDLVSPKHMLRADNNPWIKEIADQLVLGTSHVLTYLRTTGKDGYEERYK
AVKAMNSAPPPKKEREKTLKKKKDKK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_041854XLOC_041854Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00066994TCONS_00066994Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR001611Leu-rich_rpt
IPR032675L_dom-like
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00364LRR_bac_2coord: 62..81
e-value: 230.0
score: 3.3
coord: 39..58
e-value: 180.0
score: 4.1
coord: 156..175
e-value: 350.0
score: 1.9
coord: 85..104
e-value: 110.0
score: 5.8
coord: 179..199
e-value: 27.0
score: 10.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 252..276
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 85..108
e-value: 17.0
score: 11.3
coord: 179..202
e-value: 0.0078
score: 25.4
coord: 62..84
e-value: 48.0
score: 7.7
coord: 39..61
e-value: 5.8
score: 15.2
coord: 133..155
e-value: 50.0
score: 7.5
coord: 156..177
e-value: 74.0
score: 6.2
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 136..192
e-value: 1.2E-7
score: 31.2
coord: 15..75
e-value: 1.4E-8
score: 34.2
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 108..123
e-value: 0.012
score: 15.5
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 181..202
score: 6.811
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 135..156
score: 5.725
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 110..133
score: 5.563
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 64..86
score: 6.903
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 87..108
score: 4.963
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 16..37
score: 5.964
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 158..179
score: 6.087
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 41..62
score: 7.627
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 111..275
e-value: 2.3E-25
score: 88.4
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 2..110
e-value: 9.0E-25
score: 86.2
IPR032675Leucine-rich repeat domain, L domain-likeSUPERFAMILY52058L domain-likecoord: 14..222

Blast
[Close]
BLAST of TCONS_00066994-protein vs. Swiss-Prot (Human)
Match: RSU1 (Ras suppressor protein 1 OS=Homo sapiens GN=RSU1 PE=1 SV=3)

HSP 1 Score: 305.449 bits (781), Expect = 1.179e-104
Identity = 154/273 (56.41%), Postives = 198/273 (72.53%), Query Frame = 0 
Query:    1 MSKSVKKVMEESRNRGLEEIDLVDKGITNIADVPYLLNMRNITTLTLSHNRITKLPDAVANLASLENLNLFNNDLETLPLTICNLPKLRFLNCGINKLQELPKGFGACPTLEVLDLTYNNLTDRSFPGNFFYLAPLRALYLGDNEFEVLPPEIKNLVNLQVLVVRDNDLISIPKEIGELTKLRELHIQNNRLQVLPPELGYLDLVSPKHMLRADNNPWIKEIADQLVLGTSHVLTYLRTTGKDGYEERYKAV--KAMNSAP-PPKKEREKTLK 270
            MSKS+KK++EESR +   E+D+ D+GI+N+ DV  L  + +IT L LSHN++T +P  +A L +LE LN FNN +E LP  I +L KL+ LN G+N+L  LP+GFG+ P LEVLDLTYNNL++ S PGNFFYL  LRALYL DN+FE+LPP+I  L  LQ+L +RDNDLIS+PKEIGELT+L+ELHIQ NRL VLPPELG LDL   K + +A+NNPW+  IADQ  LG SHV  Y+R+       E YK +  + M + P PPKK  +K+ K
Sbjct:    1 MSKSLKKLVEESREKNQPEVDMSDRGISNMLDVNGLFTLSHITQLVLSHNKLTMVPPNIAELKNLEVLNFFNNQIEELPTQISSLQKLKHLNLGMNRLNTLPRGFGSLPALEVLDLTYNNLSENSLPGNFFYLTTLRALYLSDNDFEILPPDIGKLTKLQILSLRDNDLISLPKEIGELTQLKELHIQGNRLTVLPPELGNLDLTGQKQVFKAENNPWVTPIADQFQLGVSHVFEYIRS-------ETYKYLYGRHMQANPEPPKKNNDKSKK 266
The following BLAST results are available for this feature:
BLAST of TCONS_00066994-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RSU11.179e-10456.41Ras suppressor protein 1 OS=Homo sapiens GN=RSU1 P... [more]
back to top