TCONS_00067047-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00067047-protein
Unique NameTCONS_00067047-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length360

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00067047-protein ID=TCONS_00067047-protein|Name=TCONS_00067047-protein|organism=Clytia hemisphaerica|type=polypeptide|length=360bp
MALLIFAVILTSVVVLSIPLNSLIIIVFLKTRQSRHDAHRDFLILSLAVS
DILQALFGYPAEIRSLFNGELQDAESAACKFTAFAVTFFGLTSINHLVFM
MIKRACIVLYPFGTLTTEKFYSYVSVTFSWLISFVFALIPWVSWSGYGGT
KDRCSINWKDGSLHNRIYLYILFGCQFVLPFLIIIICYFIILKVLRKSVD
SQRSRNASLPKEIQEKLKKNESERKAVSMVVLMTSAYLIAWTPYAIISLM
TINMGDDFISQNAVLYISFLAKSSTLCNPVIYAIYSNKEYRMRMIRSYNK
WRSSNIISSSSNSKEDGASCAGGQCAEKFDSSSSSTGWTSVQFADIYRPS
KISTANVEGV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_041886XLOC_041886Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00067047TCONS_00067047Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000276G protein-coupled receptor, rhodopsin-likePRINTSPR00237GPCRRHODOPSNcoord: 5..29
score: 20.95
coord: 40..61
score: 29.96
coord: 121..142
score: 17.75
coord: 226..250
score: 22.69
coord: 169..192
score: 26.87
coord: 264..290
score: 24.92
IPR000276G protein-coupled receptor, rhodopsin-likePFAMPF000017tm_1coord: 21..282
e-value: 1.5E-33
score: 116.1
NoneNo IPR availableGENE3D1.20.1070.10coord: 1..321
e-value: 4.8E-57
score: 192.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 308..337
NoneNo IPR availableSUPERFAMILY81321Family A G protein-coupled receptor-likecoord: 4..311
IPR017452GPCR, rhodopsin-like, 7TMPROSITEPS50262G_PROTEIN_RECEP_F1_2coord: 20..282
score: 32.749

Blast
[Close]
BLAST of TCONS_00067047-protein vs. Swiss-Prot (Human)
Match: OPSD (Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.878e-24
Identity = 76/294 (25.85%), Postives = 143/294 (48.64%), Query Frame = 0 
Query:   13 VVVLSIPLNSLIIIVFLKTRQSRHDAHRDFLILSLAVSDILQALFGYPAEIRSLFNGELQDAESAACKFTAFAVTFFGLTSINHLVFMMIKRACIVLYPFGTLTTEKFYSYVSVTFSWLISFVFALIPWVSWSGY--GGTKDRCSINWK--DGSLHNRIYLYILFGCQFVLPFLIIIICYFIILKVLRKSVDSQRSRNASLPKEIQEKLKKNESERKAVSMVVLMTSAYLIAWTPYAIISLMTI-----NMGDDFISQNAVLYISFLAKSSTLCNPVIYAIYSNKEYRMRMIRS 297
            ++VL  P+N L + V ++ ++ R     ++++L+LAV+D+   L G+ + + +  +G      +  C    F  T  G  ++  LV + I+R  +V  P       + ++ + V F+W+++   A  P   WS Y   G +  C I++      ++N  ++  +F   F +P +II  CY  ++  ++++   Q           QE     ++E++   MV++M  A+LI W PYA ++         N G  F++  A     F AKS+ + NPVIY I  NK++R  M+ +
Sbjct:   47 LIVLGFPINFLTLYVTVQHKKLRTP--LNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTG-CNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQ-----------QESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPA-----FFAKSAAIYNPVIY-IMMNKQFRNCMLTT 320
The following BLAST results are available for this feature:
BLAST of TCONS_00067047-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
OPSD1.878e-2425.85Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1[more]
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