TCONS_00067467-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00067467-protein
Unique NameTCONS_00067467-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length849

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00067467-protein ID=TCONS_00067467-protein|Name=TCONS_00067467-protein|organism=Clytia hemisphaerica|type=polypeptide|length=849bp
MTAIIVRQIFQNNGAGQITQTSTTAMQGGFPSQPAIRSNNREPLSSKVKK
CQCDMDWFFKWYNKQKFLINHEGRFKVMWDWLVLLLVIFTAIQVPFYATF
TRTAPVIFDIGDGGHSEAIVILTTMVDLIFIVDIFLNFRTTYVRSSSELK
EQDSKKIAKHYLKTWFLIDLLAAIPFDLMVHDHENNSNSNASTVIGLLKS
ARLLRLFRVARKLDRYSEHGYAVLFLLMCFFMLISHWLACVWNFIATHEE
HIEDSWVRRLNDDIYPPLKEQIKCCCSRIAQNVLMNKSLINTTSSNFTNI
AGAVKQLPPIQLGVGERYIASLYFIVSSLTGVGFGNIAATTVYEQTFSVI
LMMLGTLLYACIFGNMVAIVQRSYSRQTLYHNNMTSMREFLHFYKIPHDL
QNNINNYTRREWLLSPALEAKTMLSNFPECLQADLTYELYQHVFFKNSAF
REATLSCMRALSMKMHTMTLQANLCILRRGDEIDKLYIIEKGEIEVQIKN
PETGDSQHGNKIKLGKDKTFGYDVKMMPRKPKSNSNVRTTILSEIHYIDK
NDLLEIFDTYPKFAENFRHHYSHGFDLNDVEEEGYFTTPVRKQKVHSNLL
ARQAAPIINRIHRFSKRRKSHTFNGEIAKVRSENCLLDPRYSLKMNFSEP
EENLTMSNDELSSSRKPKTSIGQFKKRALQQTMSDTSSVASNNSTIHLRP
LTPHVTPRRKLTAPAISPFLSPTKPDIETRLDNLENKVEDVNKKNEQKLN
QILRLLTELTYDRRQKSPTISSNQSEESLNHKNVKEDETLNHFLDTYTTS
SAEHHKDNNINFTMNVVDCGDDLVDCNETTPWLQESQEICSLGDRIEKK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_042139XLOC_042139Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00067467TCONS_00067467Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003938K_chnl_volt-dep_EAG/ELK/ERG
IPR000595cNMP-bd_dom
IPR005821Ion_trans_dom
IPR014710RmlC-like_jellyroll
IPR018490cNMP-bd-like
Vocabulary: Biological Process
TermDefinition
GO:0006813potassium ion transport
GO:0055085transmembrane transport
GO:0006811ion transport
Vocabulary: Molecular Function
TermDefinition
GO:0005249voltage-gated potassium channel activity
GO:0005216ion channel activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
biological_process GO:0006813 potassium ion transport
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016020 membrane
molecular_function GO:0005216 ion channel activity
molecular_function GO:0005249 voltage-gated potassium channel activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 724..758
NoneNo IPR availableGENE3D1.10.287.630coord: 378..428
e-value: 5.3E-11
score: 42.2
NoneNo IPR availableGENE3D1.10.287.70coord: 232..377
e-value: 7.3E-23
score: 79.7
NoneNo IPR availableGENE3D1.20.120.350coord: 76..231
e-value: 2.2E-13
score: 49.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 765..786
NoneNo IPR availableCDDcd00038CAP_EDcoord: 449..567
e-value: 2.08922E-12
score: 63.8842
NoneNo IPR availableSUPERFAMILY81324Voltage-gated potassium channelscoord: 308..372
coord: 72..249
IPR003938Potassium channel, voltage-dependent, EAG/ELK/ERGPRINTSPR01463EAGCHANLFMLYcoord: 318..335
score: 67.53
coord: 71..80
score: 48.75
coord: 362..371
score: 62.81
coord: 89..96
score: 46.88
coord: 134..143
score: 77.5
coord: 344..355
score: 42.19
coord: 123..133
score: 48.3
coord: 233..243
score: 64.77
IPR000595Cyclic nucleotide-binding domainSMARTSM00100cnmp_10coord: 449..572
e-value: 8.9E-4
score: 28.6
IPR000595Cyclic nucleotide-binding domainPROSITEPS50042CNMP_BINDING_3coord: 449..557
score: 11.534
IPR005821Ion transport domainPFAMPF00520Ion_transcoord: 78..377
e-value: 1.9E-27
score: 96.0
IPR014710RmlC-like jelly roll foldGENE3D2.60.120.10coord: 429..580
e-value: 5.6E-19
score: 67.7
IPR018490Cyclic nucleotide-binding-likeSUPERFAMILY51206cAMP-binding domain-likecoord: 375..571

Blast
[Close]
BLAST of TCONS_00067467-protein vs. Swiss-Prot (Human)
Match: KCNH2 (Potassium voltage-gated channel subfamily H member 2 OS=Homo sapiens GN=KCNH2 PE=1 SV=1)

HSP 1 Score: 380.948 bits (977), Expect = 2.396e-116
Identity = 216/550 (39.27%), Postives = 304/550 (55.27%), Query Frame = 0 
Query:   65 QKFLINHEGRFKVMWDWLVLLLVIFTAIQVPFYATF----TRTAPVIFDIGDGGHSEAIVILTTMVDLIFIVDIFLNFRTTYVRSSSELKEQDSKKIAKHYLKTWFLIDLLAAIPFDLMVHDHENNSNSNASTVIGLLKSARLLRLFRVARKLDRYSEHGYAVLFLLMCFFMLISHWLACVWNFIATHEEHIEDS---WVRRLNDDIYPPLKEQIKCCCSRIAQNVLMNKSLINTTSSNFTNIAGAVKQLPPIQLGVGERYIASLYFIVSSLTGVGFGNIAATTVYEQTFSVILMMLGTLLYACIFGNMVAIVQRSYSRQTLYHNNMTSMREFLHFYKIPHDLQNNINNYTRREWLLSPALEAKTMLSNFPECLQADLTYELYQHVFFKNSAFREATLSCMRALSMKMHTMTLQANLCILRRGDEIDKLYIIEKGEIEVQIKNPETGDSQHGNKIK--LGKDKTFGYDVKMMPRKPKSNSNVRTTILSEIHYIDKNDLLEIFDTYPKFAENFRHHYSHGFDLND----------VEEEGYFTTPVRKQKV 595
             ++ I H   FK +WDWL+LLLVI+TA+  P+ A F    T   P   + G      A+V L  +VD++FIVDI +NFRTTYV ++ E+     + IA HY K WFLID++AAIPFDL++        S +  +IGLLK+ARLLRL RVARKLDRYSE+G AVLFLLMC F LI+HWLAC+W  I   E+   DS   W+  L D I  P                            N + + G     P I+    ++Y+ +LYF  SSLT VGFGN++  T  E+ FS+ +M++G+L+YA IFGN+ AI+QR YS    YH  M  +REF+ F++IP+ L+  +  Y +  W  +  ++   +L  FPECLQAD+   L + +      FR AT  C+RAL+MK  T        ++  GD +  LY I +G IE+            G+ +   LGK+  FG  + +  R  KSN +VR     ++H I ++DLLE+ D YP+F+++F       F+L D           E EG F+   RK+K+
Sbjct:  396 HRWTILHYSPFKAVWDWLILLLVIYTAVFTPYSAAFLLKETEEGPPATECGYACQPLAVVDL--IVDIMFIVDILINFRTTYVNANEEVVSHPGR-IAVHYFKGWFLIDMVAAIPFDLLIF------GSGSEELIGLLKTARLLRLVRVARKLDRYSEYGAAVLFLLMCTFALIAHWLACIWYAIGNMEQPHMDSRIGWLHNLGDQIGKPY---------------------------NSSGLGG-----PSIK----DKYVTALYFTFSSLTSVGFGNVSPNTNSEKIFSICVMLIGSLMYASIFGNVSAIIQRLYSGTARYHTQMLRVREFIRFHQIPNPLRQRLEEYFQHAWSYTNGIDMNAVLKGFPECLQADICLHLNRSLLQHCKPFRGATKGCLRALAMKFKTTHAPPGDTLVHAGDLLTALYFISRGSIEI----------LRGDVVVAILGKNDIFGEPLNLYARPGKSNGDVRALTYCDLHKIHRDDLLEVLDMYPEFSDHFWSSLEITFNLRDTNMIPGSPGSTELEGGFSR-QRKRKL 889
The following BLAST results are available for this feature:
BLAST of TCONS_00067467-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCNH22.396e-11639.27Potassium voltage-gated channel subfamily H member... [more]
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